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Volume 11(3); September 2023

Review Articles

Genetics of Testcrossed Streak Virus Resistance Carotene Quality Protein Maize
Sunday Ayodele Ige, Bashir Omolaran Bello, Jimoh Mahamood, Michael Afolabi, Aremu Charity, Stephen Abolusoro, Abosede Victoria Adeniyi
Plant Breed. Biotech. 2023;11(3):155-167.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.155

Development of Provitamin A quality protein maize (PVA-QPM) conferring resistance to maize streak virus (MSV) would reduce the prevalence of the disease, alleviate malnutrition and increase food security in sub-Saharan Africa. This study was conducted to (i) evaluate early maturing PVA-QPM inbreds and their derived testcross hybrids for grain yield, MSV-resistant, carotenoids, and tryptophan contents, (ii) estimate the combining ability of the MSV-resistant PVA-QPM testcrosses for all traits. Five improved open-pollinated MSV resistance cultivars and five early maturing PVA-QPM inbreds were crossed in a half-diallel fashion without reciprocals. The derived forty-five F1 topcrosses, ten parental materials, and two commercial hybrids that served as controls were tested at the Lower Niger River Basin Development Authority in Oke-Oyi, Nigeria, during rain-fed of the year 2019 and 2020. The PVA-QPM inbreds from TZEIORQ 13, TZEIORQ 29, and TZEQI 82 that were crossed with MSV resistance AK-9528-DMRSR and Pop 28 SR appeared potentially useful combinations for enhancing grain yield, MSV-resistant, carotenoids, and tryptophan contents, Testcrossed TZEQI 82 × AK-9528-DMRSR POP 28 SR, TZEQI 82 × ACR. 91 SUWAN-1-SR C1 and TZEQI 82 × IK.91 TZL COMP 3-Y C1 were most outstanding for all measured grain yield and nutrient contents. Additive genetic effects were preponderant over non-additive genetic effects under artificial infection of MSV disease. These three promising MSV resistance PVA-QPM hybrids should be evaluated under on-farm multiplication trials for stability performance and adaptation to reduce malnourishment and food self-sufficiency in SSA. Also, further researches on genomic analyses of the superior testcrosses are desirable.

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  • Breeding Insights Into Curvularia Leaf Spot Resistance and Agronomic‐Nutritional Resilience in Extra‐Early Provitamin A‐Quality Protein Maize (Zea mays L.) Testcrosses
    Bashir Omolaran Bello
    Plant Breeding.2026;[Epub]     CrossRef
  • Marker-Assisted Selection for Gray Leaf Spot Resistance in Extra-Early Provitamin A Quality Protein Maize Inbred Lines
    Bashir Omolaran Bello, Musa Shuaib, Alafe Hakeem Azeez, Suleiman Aliyu, Adeola Comfort Odutayo, Zainab Adeola Abidoye
    Plant Molecular Biology Reporter.2026;[Epub]     CrossRef
  • Multivariate modeling of nutritional and yield traits in extra‐early provitamin A quality protein maize
    Tajudeen Afimoh Olajide, Omolaran Bashir Bello, Michael Segun Afolabi, Sunday Ayodele Ige
    Agronomy Journal.2026;[Epub]     CrossRef
  • Transcriptional and nutritional responses of extra-early provitamin A quality protein maize under aflatoxin stress
    Omolaran Bashir Bello
    Euphytica.2026;[Epub]     CrossRef
  • Metabolite‐Mediated Nutritional and Agronomic Responses of Extra‐Early Biofortified Maize (Zea mays L.) to Fall Armyworm (Spodoptera frugiperda) Infestation
    O. B. Bello, M. S. Afolabi, S. A. Ige, M. Shuaibu, A. H. Azeez, S. Aliyu, A. C. Odutayo, A. A. Ahmed, Z. A. Abidoye, O. A. Fehintola
    Plant Breeding.2026;[Epub]     CrossRef
  • Breeding for resistance to maize streak virus: challenges, progress and future directions: a review
    Malven Mushayi, Hussein Shimelis, John Derera, Seltene Abady Tesfamariam
    Frontiers in Plant Science.2025;[Epub]     CrossRef
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Recruiting Distant Hybridization for Reshaping Meiotic Recombination
Mohammad Taqi Rabbani, Gyanisha Nayak
Plant Breed. Biotech. 2023;11(3):168-184.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.168

Gene introgression that involves the transfer of favorable allelic diversity for broadening the genetic base of breeding materials is a powerful 'toolkit' for creating novel allelic combinations during plant sexual reproduction. It is a key factor playing an important role in plant breeding schemes by reintroducing genetic variation at selective sweeps or introgression of desirable traits required for the development of new varieties. Meiosis is a specialized cell division not only enables sexually reproducing organisms to reduce their genomic constituent by half, also provides indefinitely novel combinations of allelic diversity by reshuffling the parental genetic makeup. Crossing over that takes place during prophase-I facilitates the meiotically exchange of genetic materials between homolog pairs as well as their accurate segregations. It is tightly modulated and many intrinsic factors and extrinsic agents are associated with regulation of the process, however, the modulation of meiosis is possible. Although, advanced approaches such as CRIPR/Cas and Virus-Induced gene Silencing (VIGS) have opened new horizons for manipulation of meiotic recombination, distant hybridization could effectively influence the frequency and distribution of homologous (HR) and particularly homoeologous recombination (HeR). In this review, we provide a brief overview of the recent advances in the plant mechanisms for manipulation of HR and HeR employing distant hybridization.

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  • Validation of SNP Markers for Diversity Analysis, Quality Control, and Trait Selection in a Biofortified Cassava Population
    Edwige Gaby Nkouaya Mbanjo, Adebukola Ogungbesan, Afolabi Agbona, Patrick Akpotuzor, Seyi Toyinbo, Peter Iluebbey, Ismail Yusuf Rabbi, Prasad Peteti, Sharon A. Wages, Joanna Norton, Xiaofei Zhang, Adriana Bohórquez-Chaux, Hapson Mushoriwa, Chiedozie Egesi
    Plants.2024; 13(16): 2328.     CrossRef
  • Exploring genetic variability and molecular-cytogenetic profiling of rye-wheat derivatives
    Vikrant Khare, Puja Srivastava, Achla Sharma, Yousef Mohsen Feltaous, Navtej Singh Bains
    South African Journal of Botany.2024; 171: 315.     CrossRef
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Research Articles
Selection for Barley Seed Quality Increase in Kazakhstan Environment
Laura Tokhetova, Aset Toktamysov, Sabir Makhmadjanov, Gulsim Baimbetova, Zhanar Zhumadilova
Plant Breed. Biotech. 2023;11(3):185-196.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.185

The aim of the research is to investigate collective samples of barley of various ecological-geographical origination, to select donors with a high percentage of protein per grain, and to breed new varieties and hybrids with the use of various selection and genetics methods. The amount of protein per grain was determined by the Kjeldahl method, while levels of starch were indicated by the polarimetry method. The combinational capability of donors was evaluated with the use of top crossing interbreeding. Combinative mutability was evaluated under the external environment influence. An analysis of the current development and employment state of various parental form searches to cultivate high-protein kinds of barley, methods of selection through molecule marker usage, methods of hybridization, and biotechnical manipulation to achieve the desired result was conducted. Most suitable parental forms from collective materials were picked to acquire high protein per grain percentage kinds and hybrids, amongst them are Saule, Asem, Arna, Harmal, and Lignee-527 varieties. These donors are perspective varieties, that should be included in selective programs in Kazakhstan.

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  • Nutritional and Functional Composition of Barley Varieties From Legambo District, Ethiopia
    Yalew Yiblet, Worku Misganaw, Endale Adamu, Cristiano Capurso
    The Scientific World Journal.2024;[Epub]     CrossRef
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QTL Mapping for Heading Date and Yield-Related Traits in a Doubled Haploid Population Derived from Two Korean Wheat Cultivars
Sumin Hong, Kyeong-Min Kim, Changhyun Choi, Seong-Woo Cho, Chul Soo Park, Youngjun Mo
Plant Breed. Biotech. 2023;11(3):197-207.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.197

Understanding the genetics underlying heading date and yield-related traits is essential in wheat breeding for maximizing productivity under different environments. Using doubled haploid lines derived from two Korean wheat cultivars, we identified seven stable quantitative trait loci (QTLs) for yield-related traits, i.e., days to heading date (QDhd.jbnu-3B, QDhd.jbnu-6B, and QDhd.jbnu-7D), culm length (QCl.jbnu-6A), thousand kernel weight (QTkw.jbnu-6A), kernels per spike (QKps.jbnu-3B) and test weight (QTw.jbnu-1A). Compared to the lines carrying the allele for late heading, those carrying the allele for early heading at QDhd.jbnu-3B, QDhd.jbnu-6B, and QDhd.jbnu-7D headed 3.1, 2.0, and 1.7 days earlier, respectively. Interestingly, when the alleles for early heading at the three QTLs were accumulated, heading date was accelerated by approximately one week, indicating that these QTLs provide useful genetic resources to fine-tune heading date. However, as the alleles for early heading at all three QTLs were associated with decreased kernels per spike, caution is required when deploying them to minimize the negative impacts on yield. Our study provides useful information for developing wheat cultivars with optimal heading date and enhanced productivity.

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  • Variations in Major Agronomic Traits of Durum Wheat Germplasm Under Different Nitrogen Fertilization Levels
    Hosun Cheon, Sun-Hwa Kwak, Sieun Choi, Sukyeung Lee, Jinhee Park, Kyung-Min Kim, Chul Soo Park, Youngjun Mo
    Korean Journal of Breeding Science.2024; 56(3): 281.     CrossRef
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Development of SNP Marker Set to Select Varieties Tolerant to Multiple Abiotic Stresses in Rice
Jung-Woo Lee, Jung-Seok Oh, Soo-Cheul Yoo
Plant Breed. Biotech. 2023;11(3):208-219.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.208

SNP-based markers have been widely used to identify tolerant varieties harboring major genes related to abiotic stress tolerance. Here, we developed Fluidigm markers for the core set of SNPs underlying tolerance to abiotic stresses such as salinity, drought, anaerobic germination and submergence. The core set of SNPs was selected from the major genes and/or QTLs for the abiotic stresses previously reported in rice; Saltol for salinity, qDTY2.2 and qDTY4.1 for drought, OsTPP7 for anaerobic germination, and Sub1A for submergence tolerance. First, a total of 17 KASP markers were developed and converted to Fluidigm markers. The developed Fluidigm markers were applied to genotypic screening of 172 domestic and abroad varieties. The phylogenetic analysis has revealed that the majority of varieties can be largely grouped into two clusters, which correspond to domestic and foreign categories. This observation could be attributed to the fact that most tolerance genes for abiotic stresses have been inherited from indica varieties. The developed Fluidigm marker set would be used for screening genotypes tolerant to major abiotic stresses in the rice plant breeding process.

Citations

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  • Agronomic and molecular performance of rice lines carrying spikelet number and days to heading loci
    Joko Prasetiyono, Tasliah, Nafisah, Ma'sumah, Chaerani, Supriyanta, Andari Risliawati, Kurniawan Rudi Trijatmiko, Mahrup
    Crop Breeding and Applied Biotechnology.2026;[Epub]     CrossRef
  • PCR-based single nucleotide polymorphism (SNP) genotyping for crop improvement-current status and future prospects
    Jayashree Sahoo, Rukmini Mishra, Raj Kumar Joshi
    Discover Plants.2025;[Epub]     CrossRef
  • Molecular Marker Applications in the Selection of Elite Genotypes for Plant Stress Tolerance and Genetic Fidelity
    Ezgi Cabuk Sahin, Yildiz Aydin, Ahu Altinkut Uncuoglu
    OBM Genetics.2024; 08(03): 1.     CrossRef
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Genetic Purity Analysis Using Polymorphic SSR Markers in Rice Genotypes (Oryza sativa L.) and Their Confirmation for the Parental Lines
Afifuddin Latif Adiredjo, Noer Rahmi Ardiarini, Damanhuri
Plant Breed. Biotech. 2023;11(3):220-224.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.220

The purity of seeds can be identified from the traits inherited from their parental lines. Hence, contamination may occur at the crossing step due to unshared similarities with their parents. This research aims to measure the genetic purity of several genotypes obtained from crosses between upland and lowland rice through the banding pattern differences among the genotype samples by using Simple Sequence Repeats (SSR) markers. Taking the leaf samples was carried out at the experimental field, while the marker analysis was conducted in the Plant Biotechnology Laboratory. In this research, 8 (eight) genotypes obtained from crossing, comprising F1, F2, and BC1 along with 4 (four) of their parents from upland rice and lowland rice, were tested using 6 (six) drought-specific SSR primers of RM5, RM211, RM232, RM249, RM255, and RM258. The banding pattern of the electrophoresis results on the 12 rice genotypes showed clear, unsmeared quality. Based on the results of distance and genetic similarities, the 12 genotypes could be classified into 4 (four) clusters in the dendrogram. Cluster I consists of the Situ Bagendit and BC1 TWCH varieties, Cluster II the Towuti variety, Cluster III the Ciherang, Cibogo, F1 SBCH, F1 SBCB, and F1 TWCH varieties, and Cluster IV the F2 SBCH, F2 TWCH, F2 SBCB, and BC1 SBCH varieties.

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  • Introgressing photoperiod/thermo-sensitive genic male sterile gene into Basmati 370 rice
    Beatrice Nyarangi Nyankemba, Edith Esther Arunga, Paul Njiruh Nthakanio
    Journal of Experimental Biology and Agricultural Sciences.2024; 12(5): 756.     CrossRef
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