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"Hybrid"

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"Hybrid"

Research Articles

Hybridization studies and reciprocal crosses were carried out on Basella alba var alba and Basella alba var rubra morphotypes in the family Basellaceae collected from various locations in the southwestern part of Nigeria. This was done to ascertain the possibility of gene exchange between the morphotypes and to examine the performance of the F1 hybrids produced in other to help in their genetic improvement. A total of 300 crosses were carried out between the Basella alba and Basella rubra morphotypes studied. From the Basella alba × Basella rubra 150 crosses, 19 individuals were raised out of which two did not grow beyond two leave stage. The hybrids had purple pigmentation. From the reciprocal 150 Basella rubra × Basella alba crosses, 21 hybrids were raised of which 3 failed to germinate beyond two leave stage and all the remaining had red pigmentation. The F1 hybrids obtained from the crosses showed no significant difference with the parents in the vegetative and reproductive characters studied. The hybrids obtained were not significantly different irrespective of the choice of maternal parent as the red pigmentation was dominant. It was concluded that the hybrids showed no clear superiority compared with the parents except that it matured earlier under our environmental conditions.

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  • Genetic diversity assessment of accessions of Basella alba var alba and Basella alba var rubra morphotypes using vegetative and reproductive trait
    Isaac Oluwatobi Adeniran, Abolade Oluremi Bolaji
    International Journal of Vegetable Science.2024; 30(2): 163.     CrossRef
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Selection for Barley Seed Quality Increase in Kazakhstan Environment
Laura Tokhetova, Aset Toktamysov, Sabir Makhmadjanov, Gulsim Baimbetova, Zhanar Zhumadilova
Plant Breed. Biotech. 2023;11(3):185-196.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.185

The aim of the research is to investigate collective samples of barley of various ecological-geographical origination, to select donors with a high percentage of protein per grain, and to breed new varieties and hybrids with the use of various selection and genetics methods. The amount of protein per grain was determined by the Kjeldahl method, while levels of starch were indicated by the polarimetry method. The combinational capability of donors was evaluated with the use of top crossing interbreeding. Combinative mutability was evaluated under the external environment influence. An analysis of the current development and employment state of various parental form searches to cultivate high-protein kinds of barley, methods of selection through molecule marker usage, methods of hybridization, and biotechnical manipulation to achieve the desired result was conducted. Most suitable parental forms from collective materials were picked to acquire high protein per grain percentage kinds and hybrids, amongst them are Saule, Asem, Arna, Harmal, and Lignee-527 varieties. These donors are perspective varieties, that should be included in selective programs in Kazakhstan.

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  • Nutritional and Functional Composition of Barley Varieties From Legambo District, Ethiopia
    Yalew Yiblet, Worku Misganaw, Endale Adamu, Cristiano Capurso
    The Scientific World Journal.2024;[Epub]     CrossRef
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Review Articles

Recruiting Distant Hybridization for Reshaping Meiotic Recombination
Mohammad Taqi Rabbani, Gyanisha Nayak
Plant Breed. Biotech. 2023;11(3):168-184.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.168

Gene introgression that involves the transfer of favorable allelic diversity for broadening the genetic base of breeding materials is a powerful 'toolkit' for creating novel allelic combinations during plant sexual reproduction. It is a key factor playing an important role in plant breeding schemes by reintroducing genetic variation at selective sweeps or introgression of desirable traits required for the development of new varieties. Meiosis is a specialized cell division not only enables sexually reproducing organisms to reduce their genomic constituent by half, also provides indefinitely novel combinations of allelic diversity by reshuffling the parental genetic makeup. Crossing over that takes place during prophase-I facilitates the meiotically exchange of genetic materials between homolog pairs as well as their accurate segregations. It is tightly modulated and many intrinsic factors and extrinsic agents are associated with regulation of the process, however, the modulation of meiosis is possible. Although, advanced approaches such as CRIPR/Cas and Virus-Induced gene Silencing (VIGS) have opened new horizons for manipulation of meiotic recombination, distant hybridization could effectively influence the frequency and distribution of homologous (HR) and particularly homoeologous recombination (HeR). In this review, we provide a brief overview of the recent advances in the plant mechanisms for manipulation of HR and HeR employing distant hybridization.

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  • Validation of SNP Markers for Diversity Analysis, Quality Control, and Trait Selection in a Biofortified Cassava Population
    Edwige Gaby Nkouaya Mbanjo, Adebukola Ogungbesan, Afolabi Agbona, Patrick Akpotuzor, Seyi Toyinbo, Peter Iluebbey, Ismail Yusuf Rabbi, Prasad Peteti, Sharon A. Wages, Joanna Norton, Xiaofei Zhang, Adriana Bohórquez-Chaux, Hapson Mushoriwa, Chiedozie Egesi
    Plants.2024; 13(16): 2328.     CrossRef
  • Exploring genetic variability and molecular-cytogenetic profiling of rye-wheat derivatives
    Vikrant Khare, Puja Srivastava, Achla Sharma, Yousef Mohsen Feltaous, Navtej Singh Bains
    South African Journal of Botany.2024; 171: 315.     CrossRef
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Prospects of Embryo Rescue in Developing Novel Brassica Genotypes
Romana Sharmin Ripa, Subroto Das Jyoti, Arif Hasan Khan Robin
Plant Breed. Biotech. 2023;11(1):1-14.   Published online March 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.1.1

Interspecific hybridization creates new genetic variants. Embryo formation and subsequently fertile seed development are the indicators of successful interspecific hybridization. Often interspecific hybridization is limited due to variations in genome and ploidy levels. The technique of embryo rescue is commonly used in interspecific hybridization to facilitate the survival of embryos from abortion. The effectiveness of an embryo rescue program in the Brassica species depends on embryo age, embryo development stage and media composition. Embryo rescue protocol could be effectively utilized to solve some major problems of the oilseed Brassica growers including blackleg, clubroot and Alternaria disease resistance, salinity, and drought tolerance etc. This review article discusses the prospects of developing novel Brassica hybrid genotypes with desirable traits through embryo rescue.

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  • New achievements in tissue culture of the vegetable and medicinal brassica Diplotaxis tenuifolia (L.) DC: Axillary shoot proliferation, somatic embryogenesis and histological analysis, and polyphenolic compounds profile of in vitro and acclimatized plants
    Nevena Banjac, Dušica Janošević, Branka Vinterhalter, Uroš Gašić, Milena Trajković, Marija Petrović, Dijana Krstić-Milošević
    South African Journal of Botany.2025; 187: 448.     CrossRef
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  • 1 Crossref

Research Articles

Development of SNP Markers for Identification of Squash F1 Hybrid Cultivars Using Fluidigm-Based Genotyping
Jong-Geun Park, Jeong-Eui Hong, Md Abdur Rahim, Ill-Sup Nou
Plant Breed. Biotech. 2022;10(3):163-173.   Published online August 31, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.3.163

Squash (Cucurbita moschata D.) is an economically important vegetable of the Cucurbitaceae family. The genetic purity of commercial hybrid seed is crucial for the success of hybrid seed production. The molecular markers like single nucleotide polymorphism (SNP) can efficiently and cost-effectively distinguish the genetic differences among F1 hybrid cultivars. Therefore, in this study, we used ‘Fluidigm SNP Genotyping’ assay using 27 SNPs to distinguish and purity analysis of registered commercial F1 hybrid cultivars and F1 breeding lines of squash. Of these, eight SNP markers, including CMo-A01, CMo-A02, CMo-A04, CMo-A05, CMo-A12, CMo-A16, CMo-A20 and CMo-A25 can successfully identified heterozygotes from the registered commercial F1 hybrid squash cultivars with 100% accuracy and partial contamination was detected for F1 hybrid squash breeding lines which resulted due to outcrossing. Moreover, the HRM analysis of a registered commercial F1 hybrid cultivar ‘Parangsae’ with CMo-A03 SNP marker showed 96.30-100% purity of the cultivar. Our results suggest that the ‘Fluidigm SNP Genotyping’ technology could be a rapid and cost-effective method for cultivar differentiation and genetic purity analysis of F1 hybrids and squash cultivars.

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  • Unlocking the Potential of Cucurbitaceae Seed Oils: A Narrative Review on Phytochemical, Pharmacological, and Biotechnological Applications
    Boniface Anthony Ale, Peter Chinedu Agu, Patrick Maduabuchi Aja
    Natural Product Communications.2026;[Epub]     CrossRef
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Tomato Yield Effects of Reciprocal Hybridization of Solanum lycopersicum Cultivars M82 and Micro-Tom
Sujeevan Rajendran, Jong Hyang Bae, Min Woo Park, Jae Hyun Oh, Hwang Weon Jeong, Young Koung Lee, Soon Ju Park
Plant Breed. Biotech. 2022;10(1):37-48.   Published online March 28, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.1.37

Plant breeders have accumulated hybrid effects to increase food production in order to counteract the loss of arable land. Hybrids may possess novel genetic potential to increase agricultural productivity; however, the relationships between genetic resources for optimizing crop productivity remain mostly unclear. In this study, we recorded heterosis effects of genetically inherited traits by reciprocal hybridization of the Solanum lycopersicum cultivar Micro-Tom and the commercial cultivar M82, which are currently available as in silico mutant populations, to identify mutant genes which can induce heterosis. The genetic variations between M82 and Micro-Tom caused intermediate phenotypic effects with regard to flowering time, plant height, and fruit size, indicating additive interactions among variations with a hybrid background. The total yield of F1 hybrid was similar to that of cultivar M82, regardless of reduced vegetative biomass, and it revealed an overdominance effect regarding number of harvested fruits. The inheritance of the phenotypes was similar among reciprocal F1 hybrids with different paternal and maternal materials. Based on the consistency of hybrids and wild types, Micro-Tom mutants showing floral homeotic defects and large plant size can be efficiently screened for overdominant yield mutants in F1 hybrids. Therefore, we suggest that identical traits in reciprocal hybrids between Micro-Tom and M82 varieties are useful as control F1 hybrids to improve field tomato productivity by screening mutant hybrids of Micro-Tom mutants and commercial variety M82.

Citations

Citations to this article as recorded by  
  • Introgression of dwarfing genes into tomato fruit through backcrossing aiming at salad-type background
    Thúlio P. Mattos, Gabriel M. Maciel, Camila S. de Oliveira, Ana L. A. Ribeiro, Ana C. S. Siquieroli, Nilo C. Q. Silva, Orlando R. de Oliveira, Vinicius A. Pereira
    Revista Caatinga.2025;[Epub]     CrossRef
  • Enhancing fruit quality and stress resilience: Genetic advancements in dwarf tomato populations
    Thúlio Pereira Mattos, Gabriel Mascarenhas Maciel, Ana Luisa Alves Ribeiro, Camila Soares de Oliveira, Ana Carolina Silva Siquieroli, Nilo Cesar Queiroga Silva, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara
    Acta Scientiarum. Agronomy.2025; 47(1): e72614.     CrossRef
  • Unraveling novel mechanisms controlling heterosis in seeds: advances and biotechnological applications in crops
    Sara Belcapo, Elise Réthoré, Eric Nguema-Ona, Ignacio Ezquer, Rainer Melzer
    Journal of Experimental Botany.2025; 76(22): 6619.     CrossRef
  • Small and strong: Dwarf cultivars as a strategic response to shade avoidance syndrome through molecular, hormonal, and breeding innovations
    Sujeevan Rajendran, Su Min Chun, Yu Mi Kang, Gyu Hun Hwang, Do Hyun Lee, Sang‐Hoon Lee, Bumkyu Lee, Ho Cheol Kim, Jong Hyang Bae, Chul Min Kim
    Agronomy Journal.2025;[Epub]     CrossRef
  • Light quality and intensity modulation on yield and quality on crops grown in vertical farms
    A. Ferrante, S. Toscano, D. Romano
    European Journal of Horticultural Science.2024; 89(5): 1.     CrossRef
  • New insights into the use of dwarf tomato plants for pest resistance
    Gabriel Mascarenhas Maciel, Camila Soares de Oliveira, Ana Carolina Silva Siquieroli, Lucas Medeiros Pereira, Ana Luisa Alves Ribeiro, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, Nilo Cesar Queiroga Silva, Ana Karoline Silva Rocha de Farias
    Bragantia.2024;[Epub]     CrossRef
  • Saladette-type dwarf tomato introgression lines with agronomic potential, improved fruit quality, and biotic stress tolerance
    Camila Soares de Oliveira, Gabriel Mascarenhas Maciel, Ana Carolina Silva Siquieroli, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, Lucas Medeiros Pereira
    Ciência e Agrotecnologia.2024;[Epub]     CrossRef
  • Additional Advantages for Agronomic Performance and Fruit Quality in Tomato Hybrids of the Saladette Type Derived from a Dwarf Male Parent
    Lucas Medeiros Pereira, Gabriel Mascarenhas Maciel, Ana Carolina Silva Siquieroli, Ana Luisa Alves Ribeiro, Frederico Garcia Pinto, Brena Rodrigues Mota Ikehara, José Magno Queiroz Luz, Rickey Yoshio Yada, Camila Soares de Oliveira
    Horticulturae.2024; 10(11): 1145.     CrossRef
  • Heterosis in horticultural crop breeding: combining old theoretical bases with modern genomic views
    Silvia Farinati, Francesco Scariolo, Fabio Palumbo, Alessandro Vannozzi, Gianni Barcaccia, Margherita Lucchin
    Frontiers in Horticulture.2023;[Epub]     CrossRef
  • Studies on the Molecular Basis of Heterosis in Arabidopsis thaliana and Vegetable Crops
    Saaya Shiraki, Kazumasa Fujiwara, Yoshiki Kamiya, Mst. Arjina Akter, Elizabeth S. Dennis, Ryo Fujimoto, Hasan Mehraj
    Horticulturae.2023; 9(3): 366.     CrossRef
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Production of Synthetic Brassica napus through Interspecific Hybridization between Brassica rapa and Brassica oleracea and Their Cross-Ability Evaluation
Gour Gobindo Das, Md Abdul Malek, AKM Shamsuddin, GHM Sagor
Plant Breed. Biotech. 2021;9(3):171-184.   Published online September 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.3.171

Synthetic B. napus was produced through interspecific hybridization between nine varieties of B. rapa and only one exotic variety of B. oleracea var. alboglabra along with exogenous application of gibberellic acid (GA3) before pollination. A total of eighteen crosses including their reciprocals were made between the two species. Crossability in both way directions between the two species of Brassica was not equally success. The degree of success was significantly influenced by maternal genotypes. On average, the cross success was 8.42% when the varieties of B. rapa used as female parents in contrast to 2.88% when B. rapa used a pollen parents. Among the four concentrations (25, 50, 75 and 100 ppm) of GA3, 75 ppm gave highest response for different crossability characters in both way cross directions. The hybrids contained 19 somatic chromosomes which were the sum of the gametic chromosome number of B. rapa and B. oleracea. Of the two methods, followed to induce chromosome doubling in the adult plants, the Modified Injection Method was found more effective than the Cotton Plug Method. Among different concentration of colchinine 0.20% gave the highest success (66.67%) of chromosome doubling in the hybrids. All the colchiploid (C1) plants contained 38 chromosomes in their somatic cells which were the sum of the somatic chromosomes of both species. The genomes of resynthesized lines were also identified through Brassica genome specific SSR markers. The presence of markers for both A and C genome was detected in resynthesized lines suggesting that their genomic constitution was AACC.

Citations

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  • Colchicine-induced polyploidy as a strategy for genetic enhancement of Brassica rapa var. chinensis
    Masood Kausar, Sajjad Ali Shah, Iftikhar jan, Adil Khan, Syeda Rahmat bibi, Hina Ali, Musaab Dauelbait, Esmael M. Alyami, Mona Alsolami, Abdel-Rhman Z. Gaafar
    BMC Plant Biology.2026;[Epub]     CrossRef
  • Introgression of a Stable Locus for White Rust Resistance Harboring Putative NBS-LRR Class R Genes in Backcross Progeny of Allohexaploid Brassica
    Kaushal Pratap Singh, Prajjwal Rai, Pramod Kumar Rai, Preetesh Kumari
    Plant Molecular Biology Reporter.2026;[Epub]     CrossRef
  • Fertility, genome stability, and homozygosity in a diverse set of resynthesized rapeseed lines
    Elizabeth Ihien Katche, Antje Schierholt, Heiko C. Becker, Jacqueline Batley, Annaliese S. Mason
    The Crop Journal.2023; 11(2): 468.     CrossRef
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Adaptation of Hybrid Maize to Greenbelt and Ironstone Plateau Agro-Ecologies of South Sudan
Luka A.O. Awata, Susan A. Tokwiny, Innocent Kitara, Richard O. Zozimo, Victor S. Bennet, Cirino O. Oyiki
Plant Breed. Biotech. 2021;9(2):124-138.   Published online June 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.2.124

Maize is a major staple food and source of income for over 90% of the population in South Sudan however, average yield is very low (0.5-0.9 t/ha). Little research has been done on maize improvement in the country and farmers mainly depend on local and unimproved cultivars. Identification and release of adapted and high yielding hybrids may elevate average maize yield (t/ha) among the resource-poor farmers in the country. Improved maize hybrids from the region have not been tested under South Sudanese environments.
Objective
s of the study were to: (i) determine genotype by environment interactions among some regional maize genotypes; (ii) estimate genetic components and heritability for yield performances; and (iii) identify high yielding maize hybrids adapted to agroecologies of South Sudan. At least 48 maize genotypes including elite hybrids and open-pollinated varieties (OPV) adapted across sub-Saharan Africa and two local cultivars collected from local farmers in South Sudan were evaluated across five locations within greenbelt and ironstone plateau agro-ecologies over three years (2013-2015). Experiments were set up in a 12 × 4 alpha lattice design with 2 replications. Standard agronomic practices were followed and data recorded on yield traits and resistance to major diseases. Across locations and years analysis revealed significant differences among genotypes due to genotype and genotype × environment interactions (P ≤ 0.01). Significant variability (P ≤ 0.01) existed among the genotypes for yield stability across environments. The study identified hybrids SC719 (8.3 t/ha), KH500-22A (8.0 t/ha) and Longe 10H (7.9 t/ha) as the best and stable candidates.

Citations

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  • Climate adaptation and livelihood strategies in the Madurese community of Sumenep, Indonesia
    Agus Danugroho, Rustinsyah Rustinsyah, Muhammad Adib, Usman Idris
    Development in Practice.2026; 36(2): 209.     CrossRef
  • New okra genotypes for the management of aphids (Hemiptera: Aphididae) in the diverse ecological landscapes of Central Africa
    Albert Fomumbod Abang, Srinivasan Ramasamy, Rachid Hanna, Sevillor Kekeunou, Apollin Fotso Kuate, Abdou Tenkouano, Komi Kouma Mokpokpo Fiaboe, Charles-Félix Bilong Bilong, Louis Hesler
    Journal of Economic Entomology.2024; 117(5): 2123.     CrossRef
  • Genetic Diversity and Population Structure of Normal Maize Germplasm Collected in South Sudan Revealed by SSR Markers
    Emmanuel Andrea Mathiang, Kyu Jin Sa, Hyeon Park, Yeon Joon Kim, Ju Kyong Lee
    Plants.2022; 11(20): 2787.     CrossRef
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Breeding Hybrid Rice with Genes Resistant to Diseases and Insects Using Marker-Assisted Selection and Evaluation of Biological Assay
Me-Sun Kim, Sothea Ouk, Kuk-Hyun Jung, Yoohan Song, Le Van Trang, Ju-Young Yang, Yong-Gu Cho
Plant Breed. Biotech. 2019;7(3):272-286.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.272

Developing elite hybrid rice varieties is one important
objective
of rice breeding programs. Several genes related to male sterilities, restores, and pollinators have been identified through map-based gene cloning within natural variations of rice. These identified genes are good targets for introducing genetic traits in molecular breeding. This study was conducted to breed elite hybrid lines with major genes related to hybrid traits and disease/insect resistance in 240 genetic resources and F1 hybrid combinations of rice. Molecular markers were reset for three major hybrid genes (S5, Rf3, Rf4) and thirteen disease/insect resistant genes (rice bacterial blight resistance genes Xa3, Xa4, xa5, Xa7, xa13, Xa21; blast resistance genes Pita, Pib, Pi5, Pii; brown planthopper resistant genes Bph18(t) and tungro virus resistance gene tsv1). Genotypes were then analyzed using molecular marker-assisted selection (MAS). Biological assay was then performed at the Red River Delta region in Vietnam using eleven F1 hybrid combinations and two control vatieties. Results showed that nine F1 hybrid combinations were highly resistant to rice bacterial blight and blast. Finally, eight F1 hybrid rice varieties with resistance to disease/insect were selected from eleven F1 hybrid combinations. Their characteristics such as agricultural traits and yields were then investigated. These F1 hybrid rice varieties developed with major genes related to hybrid traits and disease/insect resistant genes could be useful for hybrid breeding programs to achieve high yield with biotic and abiotic resistance.

Citations

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  • Resistance gene against Xanthomonas oryzae pv. Oryzae (Xoo) in rice: molecular mechanisms and breeding strategies for bacterial leaf blight
    Hongrui Jiang, Qina Huang, Changdeng Yang, Yan Liang
    Frontiers in Plant Science.2026;[Epub]     CrossRef
  • Identification of new genetic resources for broad-spectrum blast resistance genes in Iranian rice germplasm
    Mostafa Modarresi, Hadis Shahbazi, Alireza Tarang, Farzin Pouramir, Maryam Hosseini Chaleshtori, Fatemeh Habibi
    Euphytica.2025;[Epub]     CrossRef
  • ‘Drimi9ho’, A Lodging Tolerance with Mid-late Maturing, Improved White-backed Planthopper (Sogatella furcifera) and Cultivation Stability
    Jae-Ryoung Park, Eun-Gyeong Kim, Yoon-Hee Jang, Kyung-Min Kim
    Korean Journal of Breeding Science.2025; 57(4): 493.     CrossRef
  • Origins of Susceptibility to Insect Herbivores in High-Yielding Hybrid and Inbred Rice Genotypes
    Finbarr G. Horgan, Maria Liberty P. Almazan, Carmencita C. Bernal, Christine Jade Dilla-Ermita, Goli Ardestani, Enrique A. Mundaca, Eduardo Crisol-Martínez
    Insects.2024; 15(8): 608.     CrossRef
  • Heterosis for Interactions between Insect Herbivores and 3-Line Hybrid Rice under Low and High Soil Nitrogen Conditions
    Finbarr G. Horgan, Carmencita C. Bernal, Angelee Fame Ramal, Maria Liberty P. Almazan, Enrique A. Mundaca, Eduardo Crisol-Martínez
    Insects.2024; 15(6): 416.     CrossRef
  • Genomic Architecture of Yield Performance of an Elite Rice Hybrid Revealed by its Derived Recombinant Inbred Line and Their Backcross Hybrid Populations
    Fan Zhang, Conghe Zhang, Xiuqin Zhao, Shuangbing Zhu, Kai Chen, Guixiang Zhou, Zhichao Wu, Min Li, Tianqing Zheng, Wensheng Wang, Zhi Yan, Qinyong Fei, Zhikang Li, Jinjie Chen, Jianlong Xu
    Rice.2022;[Epub]     CrossRef
  • Genomic Approaches to Identify Molecular Bases of Crop Resistance to Diseases and to Develop Future Breeding Strategies
    Antonia Mores, Grazia Maria Borrelli, Giovanni Laidò, Giuseppe Petruzzino, Nicola Pecchioni, Luca Giuseppe Maria Amoroso, Francesca Desiderio, Elisabetta Mazzucotelli, Anna Maria Mastrangelo, Daniela Marone
    International Journal of Molecular Sciences.2021; 22(11): 5423.     CrossRef
  • Genetic dissection of heterosis of indica–japonica by introgression line, recombinant inbred line and their testcross populations
    Wenqing Yang, Fan Zhang, Sundus Zafar, Junmin Wang, Huajin Lu, Shahzad Naveed, Jue Lou, Jianlong Xu
    Scientific Reports.2021;[Epub]     CrossRef
  • Hybrid Incompatibility of the Plant Immune System: An Opposite Force to Heterosis Equilibrating Hybrid Performances
    Vanesa Calvo-Baltanás, Jinge Wang, Eunyoung Chae
    Frontiers in Plant Science.2021;[Epub]     CrossRef
  • History and Results of Rice Breeding in Korea
    Young-Chan Cho, Man-Kee Baek, Hyun-Su Park, Jun-Hyun Cho, Eok-Keun Ahn, Jung-Pil Suh, Ji-Ung Jeung, Jong-Hee Lee, Yong-Jae Won, Yoo-Chun Song, Eung-Gi Jeong, Bo-Kyeong Kim, Jeom-Ho Lee
    Korean Journal of Breeding Science.2020; 52(S): 58.     CrossRef
  • Transcriptional Modulation of Resistance against Xanthomonas oryzae pv. oryzae Korean Race K2 in japonica Rice
    Marjohn C. Niño, Yong-Gu Cho
    Agronomy.2020; 10(7): 960.     CrossRef
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FISH Karyotype Comparison between Wild and Cultivated Perilla Species Using 5S and 45S rDNA Probes
Eliazar Alumbro Peniton, Nomar Espinosa Waminal, Tae-Ho Kim, Hyun Hee Kim
Plant Breed. Biotech. 2019;7(3):237-244.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.237

Perilla species (Lamiaceae) have been used as a resource for oilseeds and vegetables, and medicinal purposes. Cytogenetic studies based on chromosomal composition are essential to understand the basic genome structure of a species and to provide vital information for crop improvements. However, only a few studies have assessed the cytogenetic aspects of Perilla species. Fluorescence in situ hybridization (FISH) karyotypes using 5S and 45S rDNA probes were analyzed for the wild and cultivated species of Perilla: P. citriodora and P. frutescens. Chromosome complements were diploid in P. citriodora and allotetraploid in P. frutescens. The chromosome length ranged from 3.07 to 4.92 μm and 2.41 to 5.73 μm in the diploid and allotetraploid variants, respectively. The karyotypic formula was 2n = 12m + 8sm (2 satellites) for P. citriodora and 2n = 20m + 20sm (2 satellites) for P. frutescens. A pair of 5S signals was detected in the telomeric region of chromosome pair 7, while a pair of 45S rDNA signals was detected in the telomeric region extending through the satellite region of chromosome 2 of P. citriodora. However, two pairs of 5S signals were detected from the interstitial to the telomeric regions of chromosome 7 and 17, and a pair of 45S rDNA signals was located on the satellite region of chromosome 20 of P. frutescens. This result will provide useful information to develop a breeding program and to construct the chromosomal backbone for the ongoing genome sequence assembly project.

Citations

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  • Cytogenomic profiling of Panax ginseng cultivars and in vitro root cultures through multi-color PLOP-FISH and flow cytometry reveals somaclonal variations
    Eliazar A. Peniton Jr., Hong T. Nguyen, Nomar E. Waminal, Tae-Jin Yang, Hyun Hee Kim
    Journal of Ginseng Research.2026; 50(4): 101058.     CrossRef
  • Cytogenomic evaluation of regenerated Aralia elata using PLOP-FISH and flow cytometry
    Eliazar Alumbro Peniton, Hong Thi Nguyen, Nomar Espinosa Waminal, Tae-Jin Yang, Hyun Hee Kim
    Scientific Reports.2024;[Epub]     CrossRef
  • Comparative triple-color FISH mapping and genome size advances understanding of the cytogenetic diversity in wild Solanum species
    Hong Thi Nguyen, Soon Ju Park, Byung Yong Kang, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2023; 64(5): 811.     CrossRef
  • Comparative FISH analysis of Senna tora tandem repeats revealed insights into the chromosome dynamics in Senna
    Thanh Dat Ta, Nomar Espinosa Waminal, Thi Hong Nguyen, Remnyl Joyce Pellerin, Hyun Hee Kim
    Genes & Genomics.2021; 43(3): 237.     CrossRef
  • Comparative triple-color FISH mapping in eleven Senna species using rDNA and telomeric repeat probes
    Thi Hong Nguyen, Nomar Espinosa Waminal, Do Sin Lee, Remnyl Joyce Pellerin, Thanh Dat Ta, Nicole Bon Campomayor, Byung Yong Kang, Hyun Hee Kim
    Horticulture, Environment, and Biotechnology.2021; 62(6): 927.     CrossRef
  • FISH Karyotype Comparison ofPlatycodon grandiflorus(Jacq.) A. DC. ‘Jangbaek’ and Its Colchicine-Induced Tetraploid ‘Etteumbaek
    Eliazar Alumbro Peniton Jr., Yurry Um, Hyun Hee Kim
    Plant Breeding and Biotechnology.2020; 8(4): 389.     CrossRef
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Cytogenetic Analyses Revealed Different Genome Rearrangement Footprints in Four ×Brassicoraphanus Lines with Different Fertility Rates
Hadassah Roa Belandres, Hui Chao Zhou, Nomar Espinosa Waminal, Soo-Seong Lee, Jin Hoe Huh, Hyun Hee Kim
Plant Breed. Biotech. 2019;7(2):95-105.   Published online June 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.2.95

×Brassicoraphanus (AARR, 2n = 38) is a synthetic intergeneric allopolyploid between Brassica rapa L. ssp. pekinensis (AA, 2n = 20) and Raphanus sativus L. var. rafiphera (RR, 2n = 18). Abnormalities in meiosis are main causes for infertility, especially in recent intergeneric allopolyploids. Several ×Brassicoraphanus lines showing varied fertility rates were produced previously, but no cytogenetic data specifying the reasons for infertility have been reported. In this study, we performed cytogenetic analyses in BB4, BB6, BB12, and BB50 lines to evaluate their chromosomal composition and behavior during meiosis. The four lines had relatively small chromosomes, ranging in length from 1.82 to 5.72 μm. BB6, BB12, and BB50 have euploid chromosome number of 2n = 38, whereas BB4 is an aneuploid with 2n − 1 = 37. Fluorescent in situ hybridization karyotype analysis by using 5S/45S rDNA revealed 5/7, 6/7, 5/5 and 5/5 pairs in BB4, BB6, BB12 and BB50, respectively. Genomic in situ hybridization analysis on cells in prophase I revealed varying frequencies of tetravalent pairing and sticky, ring, rod, and laggard chromosomes across the lines, which were more abundant in BB4 and BB6. Unlike BB4 and BB6, both BB12 and BB50 are known to have relatively higher seed fertility and uniform plant morphology. The varied degrees of chromosomal pairing stability during meiosis could explain the different fertility rates among the four ×Brassicoraphanus lines in this study. These data might facilitate breeding programs of ×Brassicoraphanus and further cytogenomic analyses.

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    Visarada Kurella B.R.S., Jinu Jacob, Kanti Meena, Deepika Cheruku, Sujatha Mulpuri
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  • Subgenome Discrimination in Brassica and Raphanus Allopolyploids Using Microsatellites
    Nicole Bon Campomayor, Nomar Espinosa Waminal, Byung Yong Kang, Thi Hong Nguyen, Soo-Seong Lee, Jin Hoe Huh, Hyun Hee Kim
    Cells.2021; 10(9): 2358.     CrossRef
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Flanking Sequence and Copy-Number Analysis of Transformation Events by Integrating Next-Generation Sequencing Technology with Southern Blot Hybridization
Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Hyun-Suk Cho, Seong-Kon Lee
Plant Breed. Biotech. 2017;5(4):269-281.   Published online December 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.4.269

With the continual development of genetically modified (GM) crops, it has become necessary to develop detailed and effective molecular characterization methods to select candidate events from a large pool of transformation events. Relative to traditional molecular analysis methods such as the polymerase chain reaction (PCR) and Southern blot hybridization, next generation sequencing (NGS) technology for whole-genome sequencing of complex crop genomes had proven comparatively useful for in-depth molecular characterization. In this study, four transformation events, including one in Bacillus thuringiensis (Bt)-resistant rice, one in resveratrol-producing rice, and two in beta-carotene-enhanced soybeans, were selected for molecular characterization. To merge NGS analysis and Southern blot-hybridization results, we confirmed the transgene insertion sites, insertion construction, and insertion numbers of these four transformation events. In addition, the read-coverage depth assessed by NGS analysis for inserted genes might provide consistent results in terms of inserted T-DNA numbers in case of complex insertion structures and highly duplicated donor genomes; however, PCR-based methods can produce incorrect conclusions. Our combined method provides an effective and complete analytical approach for whole-genome visual inspection of transformation events that require biosafety assessment.

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    Plant Breeding and Biotechnology.2025;[Epub]     CrossRef
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    Yang Qin, Hee-Jong Woo, Kong-Sik Shin, Myung-Ho Lim, Seong-Kon Lee
    Plant Cell, Tissue and Organ Culture (PCTOC).2020; 140(2): 341.     CrossRef
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Review Articles
Repeat Evolution in Brassica rapa (AA), B. oleracea (CC), and B. napus (AACC) Genomes
Nomar Espinosa Waminal, Sampath Perumal, Jonghoon Lee, Hyun Hee Kim, Tae-Jin Yang
Plant Breed. Biotech. 2016;4(2):107-122.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.107

The genus Brassica is an important resource for major agricultural products such as oils, vegetable and fodder. The Brassiceae tribe-specific whole-genome triplication that occurred ~15.9 million years ago influenced the speciation and morphological diversification that has been exploited in agriculture, making Brassica an excellent model system for studying polyploidization-mediated evolution. Genome sequencing and comparative genome analysis have revealed conserved structures and uncovered the genome evolution of Brassica species. While chromosome shuffling and asymmetric subgenome gene retention are widely reported in Brassica species, limited information is available about the dynamics of repetitive elements (REs), which are central to epigenetic mechanisms and thus play a pivotal role in plant genome adaptation and evolution. The assembled reference genome sequences of B. rapa (AA) and B. oleracea (CC), and their derived allotetraploid, B. napus (AACC), cover 58%, 86%, and 75% of their respective estimated genome sizes. The remaining non-assembled genome portions vary between these three genome sequences, and the major components remain hidden in each genome. Here, we review the dynamics of the major Brassica repeats that have played roles in speciation of the AA, CC, and AACC genomes. We show that 10 major Brassica repeats appear to occupy more than 50% of each respective unassembled genome sequence, yet represent less than 1% of assembled reference genome sequences. We have estimated their genome proportions using whole-genome Illumina reads and cytogenetic analyses in an attempt to understand the role of these repeats in genome evolution.

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    Horticulture, Environment, and Biotechnology.2021; 62(6): 927.     CrossRef
  • Chromosomal Mapping of Tandem Repeats Revealed Massive Chromosomal Rearrangements and Insights Into Senna tora Dysploidy
    Nomar Espinosa Waminal, Remnyl Joyce Pellerin, Sang-Ho Kang, Hyun Hee Kim
    Frontiers in Plant Science.2021;[Epub]     CrossRef
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  • FISH mapping of rDNA and telomeric repeats in 10 Senna species
    Remnyl Joyce Pellerin, Nomar Espinosa Waminal, Hyun Hee Kim
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  • Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa
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  • Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution
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Bioengineering of Male Sterility in Rice (Oryza sativa L.)
Dung Nguyen Tien, Moe Moe Oo, Moon-Soo Soh, Soon Ki Park
Plant Breed. Biotech. 2013;1(3):218-235.   Published online September 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.3.218

Male sterility is an important trait for crop breeding program based on heterosis. Recent advances in molecular researches have led to the identification of genes involved in plant reproductive development and understanding the molecular functions of rice male gametophyte including roles of phytohormones in reproduction process. Here, we review the genes required for key aspects of anther/pollen development and conventional methods for the production of hybrid seeds in rice. Finally, we discuss the molecular approaches for the generation of male-sterile lines through the regulation of phytohormonal biosynthesis in reproductive organs.

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  • Development of an inducible male-sterility system in rice through pollen-specific expression of l-ornithinase (argE) gene of E. coli
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