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"Multivariate analysis"

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"Multivariate analysis"

Research Articles
Image Based-Phenotyping and Selection Index Based on Multivariate Analysis for Rice Hydroponic Screening under Drought Stress
Adinda Asri Laraswati, Rusnadi Padjung, Muh Farid, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Amin Nur, Andi Isti Sakinah
Plant Breed. Biotech. 2021;9(4):272-286.   Published online December 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.4.272

The development of rice varieties that are tolerant of drought stress needs to be detected with Image-based phenotyping. This Image-based phenotyping method in combination with selection index and multivariate analysis can characterize the morphological response easily within a short time, which makes it is suitable for rice screening under drought stress. Therefore, this study aims to determine the selection index based on multivariate analysis and assess the effectiveness of using image-based phenotyping in drought rice screening. This study was conducted in two stages, the first was in static hydroponic and the second was in dynamic hydroponic. In static hydroponic, a split-plot design was used, where the levels of drought were the main plots and varieties were the subplots. However, in dynamic hydroponic, a nested design was used, where the replicates were nested in the drought level treatments. Also, The drought level factors used were PEG 0%, PEG 10%, and PEG 20%, and the variety factor consisted of 5 varieties which were repeated three times. The results showed that the selection index for static hydroponic consisted of shoot area (0.421), green shoot area (0.4177), and the area growth rate (0.4192). Meanwhile, the selection index in dynamic hydroponics consisted of object extent Y from the side (0.4516) and convex hull from the side (0.4177). The regression of the two-selection index has a good determination of 0.84. Hence, these results showed that rice screening based on image-based phenotyping can be recommended for rapid screening under drought stress.

Citations

Citations to this article as recorded by  
  • Geometric image-based phenotyping and physiological analysis for validation of rice salinity tolerance screening under artificial pot conditions
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie, Nono Carsono, Abd Haris Bahrun, Suharman Hamzah, Achmad Kautsar Baharuddin, Purnama Isti Khaerani, Bernadetta Rina Hastilestari, Zeeshan A
    BMC Plant Biology.2026;[Epub]     CrossRef
  • High-density field-based 3D reconstruction of rice architecture across diverse cultivars for genome-wide association studies
    Jiexiong Xu, Jiyoung Lee, Xiangchao Gan
    Plant Methods.2026;[Epub]     CrossRef
  • High-Throughput Phenotyping: Status and Applications in Rice Breeding
    Leonilo Gramaje, Parthiban Thathapalli Prakash, Nia Manlulu, Rogemae Ravela, Monique Corpuz, Alvin Palanog, Norvie Manigbas, Pompe Sta Cruz, Suresh Babu Kadaru, Jose Hernandez
    Plants.2026; 15(13): 1944.     CrossRef
  • Evaluation of interspecific crossing line x tester (C. annuum and C. frutescens) on chili fruit based on image processing and multivariate analysis
    Muhammad Fuad Anshori, Abd Haris Bahrun, Nuniek Widiayani, Dwi Lestari, Reynaldi Laurenze, Muhammad Faried, Nirwansyah Amier, Nurafika Nurafika
    Reproduction and Breeding.2025; 5(3): 135.     CrossRef
  • Screening lentil genotypes for chromium resilience: A study of growth characteristics, oxidative stress responses, and expression analysis
    Fawad Ali, Yiren Zhao, Shah Zeb, Obaid Ullah Shah, Mian Abdur Rehman Arif, Arif Ali, Li Liao, Zhiyong Wang
    Environmental Technology & Innovation.2025; 39: 104318.     CrossRef
  • Optimized framework for evaluating F3 transgressive segregants in cayenne pepper
    Ifayanti Ridwan, Muh Farid, Feranita Haring, Nuniek Widiayani, Ahmad Yani, Nirwansyah Amier, Muhammad Alfan Ikhlasul Amal, Jekvy Hendra, Nawab Ali, Mekhled M. Alenazi, Mahmoud F. Seleiman, Willy Bayuardi Suwarno, Muhammad Fuad Anshori
    BMC Plant Biology.2025;[Epub]     CrossRef
  • High throughput phenomics in elucidating drought stress responses in rice (Oryza sativa L.)
    S. Anand, R. L. Visakh, R. Nalishma, R. P. Sah, R. Beena
    Journal of Plant Biochemistry and Biotechnology.2025; 34(1): 119.     CrossRef
  • Optimizing hydroponic salinity screening: a novel approach using image-based phenotyping for double haploid rice selection
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Nono Carsono, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie, Abd Haris Bahrun, Achmad Kautsar Baharuddin, Purnama Isti Khaerani, Zeeshan Ali, Majed Alotaibi, Nawab Ali, Mahmoud F. Selei
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
  • Interaction of Principal Component Analysis and Normalized Difference Vegetation Index (NDVI) Using Drone in Evaluation of the Vegetative Phase of Rice
    Andi Isti Sakinah, Muh Farid, Yunus Musa, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Hari Iswoyo
    Asian Journal of Plant Sciences.2024; 23(1): 88.     CrossRef
  • Image-Based Digitalization of Germplasm Stock: Overcoming Its Limitations
    Ju-Kyung Yu, Yong Suk Chung
    Korean Journal of Breeding Science.2024; 56(3): 293.     CrossRef
  • A comprehensive multivariate approach for GxE interaction analysis in early maturing rice varieties
    Muhammad Fuad Anshori, Yunus Musa, Muh Farid, Muh Jayadi, Rusnadi Padjung, Kaimuddin Kaimuddin, Yi Cheng Huang, Madonna Casimero, Iris Bogayong, Willy Bayuardi Suwarno, Hasil Sembiring, Bambang Sapta Purwoko, Amin Nur, Wahyuni Wahyuni, Daniel O. Wasonga,
    Frontiers in Plant Science.2024;[Epub]     CrossRef
  • Fusing Genotype and Soil Organic/Inorganic Amendment to Improve Saline-sodic Properties and Rice Productivity
    Osama A. M. Ali, Bassiouni A. Zayed, Moamen M. M. Abou El-Enin, Aly F. El Sheikha, Ahmed M. S. Kheir, Yasser A. El-Tahlawy, Wael M. Nada, Ahmed Shaaban
    Journal of Soil Science and Plant Nutrition.2024; 24(2): 2413.     CrossRef
  • Combining Image-Based Phenotyping and Multivariate Analysis to Estimate Fruit Fresh Weight in Segregation Lines of Lowland Tomatoes
    Muh Farid, Muhammad Fuad Anshori, Riccardo Rossi, Feranita Haring, Katriani Mantja, Andi Dirpan, Siti Halimah Larekeng, Marlina Mustafa, Adnan Adnan, Siti Antara Maedhani Tahara, Nirwansyah Amier, M. Alfan Ikhlasul Amal, Andi Isti Sakinah
    Agronomy.2024; 14(2): 338.     CrossRef
  • Multivariate analysis and image-based phenotyping of cayenne fruit traits in selection and diversity mapping of multiple F1 cross lines
    Muhammad Fuad Anshori, Yunus Musa, Novaty Eny Dungga, Nuniek Widiayani, Arfina Sukmawati Arifin, A. Masniawati, Firmansyah, Muh Farid, Andi Dirpan, Andi Isti Sakinah, Nirwansyah Amier
    Reproduction and Breeding.2024; 4(4): 194.     CrossRef
  • Seedling Stage Image-Based Phenotyping Selection Criteria through Tolerance Indices on Drought and Salinity Stress in Rice
    Andi Isti Sakinah, Muh Farid, Yunus Musa, Aris Hairmansis, Muhammad Fuad Anshori
    Plant Breeding and Biotechnology.2024;[Epub]     CrossRef
  • Optimization Study of RGB Image-based Apple Fruit Measurement for Digital Breeding
    Jae Il Lyu, Chaewon Lee, Seo Yeon Lee, Younguk Kim, Nyunhee Kim, Ji Seon Song, JeongHo Baek, Jung Gun Cho, Kyung-Hwan Kim
    Korean Journal of Breeding Science.2023; 55(4): 303.     CrossRef
  • An overview of image-based phenotyping as an adaptive 4.0 technology for studying plant abiotic stress: A bibliometric and literature review
    Muhammad Fuad Anshori, Andi Dirpan, Trias Sitaresmi, Riccardo Rossi, Muh Farid, Aris Hairmansis, Bambang Purwoko, Willy Bayuardi Suwarno, Yudhistira Nugraha
    Heliyon.2023; 9(11): e21650.     CrossRef
  • Changes in Vertical Phenotypic Traits of Rice (Oryza sativa L.) Response to Water Stress
    Yufan Zhang, Yuanyuan Zha, Xiuliang Jin, Yu Wang, Han Qiao
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Exogenously Applied Salicylic Acid Boosts Morpho-Physiological Traits, Yield, and Water Productivity of Lowland Rice under Normal and Deficit Irrigation
    Heba Abdelhamid El Sherbiny, Essam F. El-Hashash, Moamen M. Abou El-Enin, Randa Samir Nofal, Taia A. Abd El-Mageed, Eman Mohamed Bleih, Mohamed T. El-Saadony, Khaled A. El-Tarabily, Ahmed Shaaban
    Agronomy.2022; 12(8): 1860.     CrossRef
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Genetic Parameters and Multivariate Analysis to Determine Secondary Traits in Selecting Wheat Mutant Adaptive on Tropical Lowlands
Muh Farid, Nasaruddin Nasaruddin, Yunus Musa, Muhammad Fuad Anshori, Ifayanti Ridwan, Jekvy Hendra, Gatot Subroto
Plant Breed. Biotech. 2020;8(4):368-377.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.368

One of approaches to maintain the yield stability of the lowland tropical wheat is the use of secondary traits in the selection process. The identification of these characters requires a statistical approach in the form of genetic parameter analysis and multivariate analysis. The
objective
of this study was to determine the secondary traits of adaptive wheat mutants in the lowlands through the use of genetic parameters and multivariate analysis on the parameters. The study consisted of three field trials conducted in three different regencies, namely Jeneponto (135 m above sea level (asl)), Maros (100 m asl) and Bantaeng (125 m asl). The study used a nested design, where replications were nested in the environments. The genotype factors consisted of 20 genotypes repeated three times. 11 characters were observed including vegetative and reproductive characters. The analysis used consisted of repeatability, correlation, cluster analysis, principal component analysis, factor analysis, and cross print analysis. The overall results of the analysis indicate that the number of productive tillers is the main secondary trait for the selection of adaptive wheat in the lowlands. The character can be recommended for selection criteria in testing wheat lines in the lowlands to make an effective selection.

Citations

Citations to this article as recorded by  
  • Stability and adaptability analyses to identify suitable high-yielding maize hybrids using PBSTAT-GE
    Muhammad Azrai, Muh. Farid, Amin Nur, Roy Efendi, Salengke Salengke, Yunus Musa, Baharuddin Patandjengi, Tutik Kuswinanti, Sulaeha Thamrin, Willy Bayuardi Suwarno, Nining Nurini Andayani, Bunyamin Zainuddin, Hishar Mirsam, Slamet Bambang Priyanto, Suriani
    Open Agriculture.2025;[Epub]     CrossRef
  • Comprehensive evaluation of nitrogen fertilization impact on early maturing rice varieties using multivariate analysis and vegetation indices
    Yunus Musa, Rusnadi Padjung, Nasaruddin Nasaruddin, Muh Farid, Andang Suryana Soma, Achmad Kautsar Baharuddin, Muh. Fikri Al Qautzar, Resky Maulidina Fakhri, Madonna Casimero, Amin Nur, Mahmoud F. Seleiman, Majed Alotaibi, Nawab Ali, Muhammad Fuad Anshori
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
  • Multivariate analysis and image-based phenotyping of cayenne fruit traits in selection and diversity mapping of multiple F1 cross lines
    Muhammad Fuad Anshori, Yunus Musa, Novaty Eny Dungga, Nuniek Widiayani, Arfina Sukmawati Arifin, A. Masniawati, Firmansyah, Muh Farid, Andi Dirpan, Andi Isti Sakinah, Nirwansyah Amier
    Reproduction and Breeding.2024; 4(4): 194.     CrossRef
  • A new concept in assessing adaptability index for superior potential cropping intensity in early-maturing rice
    Muhammad Fuad Anshori, Yunus Musa, Muh Farid, Muh Jayadi, Abd Haris Bahrun, Amir Yassi, Andi Amran Sulaiman, Yi Cheng Huang, Madonna Casimero, Lizzida Llorca, Willy Bayuardi Suwarno, Muh Mukhtadir Putra, Hasil Sembiring, Bambang Sapta Purwoko, Daniel O. W
    Frontiers in Sustainable Food Systems.2024;[Epub]     CrossRef
  • Selection of M5 mutant lines of wheat (Triticum aestivum L.) for agronomic traits and biomass allocation under drought stress and non-stressed conditions
    Athenkosi Makebe, Hussein Shimelis, Jacob Mashilo
    Frontiers in Plant Science.2024;[Epub]     CrossRef
  • Combining Image-Based Phenotyping and Multivariate Analysis to Estimate Fruit Fresh Weight in Segregation Lines of Lowland Tomatoes
    Muh Farid, Muhammad Fuad Anshori, Riccardo Rossi, Feranita Haring, Katriani Mantja, Andi Dirpan, Siti Halimah Larekeng, Marlina Mustafa, Adnan Adnan, Siti Antara Maedhani Tahara, Nirwansyah Amier, M. Alfan Ikhlasul Amal, Andi Isti Sakinah
    Agronomy.2024; 14(2): 338.     CrossRef
  • Interaction of Principal Component Analysis and Normalized Difference Vegetation Index (NDVI) Using Drone in Evaluation of the Vegetative Phase of Rice
    Andi Isti Sakinah, Muh Farid, Yunus Musa, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Hari Iswoyo
    Asian Journal of Plant Sciences.2024; 23(1): 88.     CrossRef
  • Multivariate and Association Analyses of Quantitative Attributes Reveal Drought Tolerance Potential of Wheat (Triticum aestivum L.) Genotypes
    Mueen Alam Khan, Muhammad Waseem Akram, Muhammad Iqbal, Hafiz Ghulam Muhu-Din Ahmed, Abdul Rehman, Hafiz Syed M. Arslan Iqbal, Beena Alam
    Communications in Soil Science and Plant Analysis.2023; 54(2): 178.     CrossRef
  • Sustainability approach in cropping intensity (CI) 400 through optimizing the dosage of compost and chemical fertilizers to early-maturing rice varieties based on multivariate analysis
    Yunus Musa, Muh Farid, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Ahmad Fauzan Adzima, Muhammad Farid Maricar, Amran Sulaiman, Yi Cheng Huang, Hari Iswoyo, Abd Haris Bahrun, Adnan Adnan
    Journal of Agriculture and Food Research.2023; 14: 100907.     CrossRef
  • Effect of salinity on seed germination and seedling growth of bullet cultivar of chilli (Capsicum annuum L.)
    Anup Kumar Sarkar, Satyajit Oraon, Subrata Mondal, Sanjoy Sadhukhan
    Brazilian Journal of Botany.2023; 46(3): 513.     CrossRef
  • Salinity tolerance selection of doubled-haploid rice lines based on selection index and factor analysis
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie
    AIMS Agriculture and Food.2022; 7(3): 520.     CrossRef
  • Cluster heatmap for screening the drought tolerant rice through hydroponic culture
    A I Sakinah, Y Musa, M Farid, M F Anshori, M Arifuddin, A A Laraswati
    IOP Conference Series: Earth and Environmental Science.2021; 807(4): 042045.     CrossRef
  • Interactions of Growth Environmental and Application of GA3 Concentration On Shallot Productivity
    A R Handayani, E Syam’un, F Ulfa
    IOP Conference Series: Earth and Environmental Science.2021; 921(1): 012051.     CrossRef
  • Interaction of Genetic and Cultivation Technology in Maize Prolific and Productivity Increase
    A. Dwie Mochammad , Rusnadi Padjung, Muh Farid, Abd Haris Bahrun, Muhammad Fuad Ansho, Nasaruddin ., Ifayanti Ridwan, Amin Nur, Muh Taufik
    Pakistan Journal of Biological Sciences.2021; 24(6): 716.     CrossRef
  • Image Based-Phenotyping and Selection Index Based on Multivariate Analysis for Rice Hydroponic Screening under Drought Stress
    Adinda Asri Laraswati, Rusnadi Padjung, Muh Farid, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Amin Nur, Andi Isti Sakinah
    Plant Breeding and Biotechnology.2021; 9(4): 272.     CrossRef
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