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Research Article

Phenotypic Characteristics of Quantitative Traits in an Everbearing Strawberry F₁ Population
Iyeong Choi, Young Hun Lee
Plant Breed. Biotech. 2025;13:229-242.
Published online October 28, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.229

Everbearing strawberry cultivars provide fruit during the summer–fall period when June-bearing strawberries are unavailable, but their breeding progress has been constrained by complex trait interactions. To characterize segregation patterns and evaluate phenotypic diversity, we developed an F₁ population from a cross between two everbearing cultivars, ‘Charlotte’ and ‘Flamenco’. Twenty selected progenies were evaluated for 30 quantitative traits encompassing vegetative vigor, inflorescence structure, fruit morphology, firmness, and biochemical composition. Substantial variation was observed among lines, with several individuals exceeding parental performance for key traits such as fruit size, soluble solids content, and sucrose accumulation. Principal component analysis revealed three major axes of variation: fruit composition (sugars and acids), vegetative vigor, and fruit size and morphology. K-means clustering grouped the progeny into three phenotypic classes, representing high-sugar, large-fruited, or vigorous growth types. Notably, some lines combined favorable attributes across classes, such as high sweetness and large fruit, indicating the potential to overcome typical trade-offs between yield and quality. These findings provide a practical framework for breeding selection and highlight superior progeny as immediate candidates for clonal advancement or as parents in future crossing. The results also establish a foundation for integrating phenotypic classifications with molecular tools to accelerate the development of high-value everbearing strawberries.

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Original Article

Seedling Stage Image-Based Phenotyping Selection Criteria through Tolerance Indices on Drought and Salinity Stress in Rice
Andi Isti Sakinah, Muh Farid, Yunus Musa, Aris Hairmansis, Muhammad Fuad Anshori
Plant Breed. Biotech. 2024;12:43-58.   Published online March 14, 2024
DOI: https://doi.org/10.9787/PBB.2024.12.43

The development of rice seedlings stressed by drought and salt is shown by different morphometric and colorimetric traits. These distinctions can be used to understand the response of plants to challenging conditions. Therefore, this study aimed to assess the efficacy of image-based phenotyping in the early testing of rice plants and observe how the plants respond to both drought and salinity. A stress tolerance index with multivariate analysis was used for the selection of the most important traits. The experiment consisted of 2 factors, namely the degree of environmental stress and rice genotype. Furthermore, the degree of environmental stress comprised normal (NaCl and PEG 0%), drought (10% PEG), salinity (60 mM NaCl), as well as a combination of moderate drought and salinity (5% PEG + 30 mM NaCl). The results showed that both morphometric (area, convex hull, bounding area, perimeter, centermassy) and colorimetric (CIVE, VARI, RGBVI, MGRVI, NDI, GLI, NGRDI) can be used as selection characters.

Citations

Citations to this article as recorded by  
  • Geometric image-based phenotyping and physiological analysis for validation of rice salinity tolerance screening under artificial pot conditions
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie, Nono Carsono, Abd Haris Bahrun, Suharman Hamzah, Achmad Kautsar Baharuddin, Purnama Isti Khaerani, Bernadetta Rina Hastilestari, Zeeshan A
    BMC Plant Biology.2026;[Epub]     CrossRef
  • Yield assessment of F6 generation tomato lines under irrigated and drought environments based on stress tolerance index
    Nirwansyah Amier, Muh Farid, Muhammad Fuad Anshori, Rahmansyah Dermawan, Adnan, Jekvy Hendra
    Reproduction and Breeding.2025; 5(4): 214.     CrossRef
  • Yield and vegetation index of different maize varieties and nitrogen doses under normal irrigation
    Rusnadi Padjung, Muh. Farid, Yunus Musa, Nasaruddin Nasaruddin, Nurfaida Nurfaida, Muhammad Fuad Anshori, Mahmud Achmad, Abdul Rahman Arinong, Nirwansyah Amier
    Open Agriculture.2025;[Epub]     CrossRef
  • Integration of gamma irradiation breeding from doubled haploid and systematic screening to develop adapted rice mutants under salinity stress
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Nono Carsono, Iswari Saraswati Dewi, Abd Haris Bahrun, Achmad Kautsar Baharuddin, Reskiana Rahman, Wijaya Murti Indriatama, Majed Alotaibi, Nawab Ali, Mahmoud F. Seleiman
    BMC Plant Biology.2025;[Epub]     CrossRef
  • Optimizing hydroponic salinity screening: a novel approach using image-based phenotyping for double haploid rice selection
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Nono Carsono, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie, Abd Haris Bahrun, Achmad Kautsar Baharuddin, Purnama Isti Khaerani, Zeeshan Ali, Majed Alotaibi, Nawab Ali, Mahmoud F. Selei
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
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Research Articles
Effects of Irrigation Conditions on Development of Mungbean (Vigna radiata L.) Sprouts
Byeong Cheol Kim, Insu Lim, Se Young Jeon, Minseo Kang, Jungmin Ha
Plant Breed. Biotech. 2021;9(4):310-317.   Published online December 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.4.310

Mungbeans (Vigna radiata L.) are one of major legume crops in Asia as major sources of proteins and carbohydrates. Additionally, they provide functional substances such as vitamin and antioxidant compounds when consumed as bean sprouts. In this study, physical traits of mungbean sprouts, such as sprouts yield, thickness and length of hypocotyl, length of epicotyl, number of lateral roots, and length of root depending on four irrigation conditions (irrigation interval: 2 and 4 hours; irrigation time: 2 and 4 minutes) were measured for three cultivars (Dahyeon, Samgang, Sunhwa). In general, the length and thickness of hypocotyl increased gradually until day 3, followed by a decrease on day 4. Lateral roots and the length of root increased during the cultivation period. Sprouts yield was higher under short irrigation time than long irrigation time until day 3. Preferable traits including sprouts yield, the length of hypocotyl, and the thickness of hypocotyl were better under shorter irrigation time conditions (2 minutes). Traits of negative effect for consumers’ preference, such as number of lateral roots and length of epicotyl, were lower under longer irrigation interval conditions (4 hours). Samgang had the highest yield of sprouts. However, it also had the highest growth of epicotyl. Although Sunhwa had preferable physical traits of bean sprouts, it had the least yield of sprouts. Overall, Dahyeon cultivated under 4 hours (irrigation interval) & 2 minutes (irrigation time) condition had the most preferable traits for producing mungbean sprouts. This study provides information about irrigation conditions affecting quality-related traits to produce mungbean sprouts.

Citations

Citations to this article as recorded by  
  • Overview of biochemical changes in red bean sprouts (Vigna angularis) during sprouting
    Le Pham Tan Quoc, Pham My Hao, Pham Thi Quyen
    Environmental and Experimental Biology.2026; 24(2): 155.     CrossRef
  • Impact of Iron (II) Chloride Treatment on the Physical and Metabolic Changes in Mungbean Sprouts
    Aerin Park, Byeong Cheol Kim, Sung Don Lim, Sung Hoon Park, Jungmin Ha
    Food Science & Nutrition.2026;[Epub]     CrossRef
  • Identification of genetic factors influencing flavonoid biosynthesis through pooled transcriptome analysis in mungbean sprouts
    Yeonghun Cho, Hakyung Kwon, Byeong Cheol Kim, Donghwan Shim, Jungmin Ha
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • Anti-Inflammatory Effects of Mung Bean (Vigna radiata) Extracts from Different Cultivars
    Yeong Jae An, Hye Young Seo, Min Young Kim, Ji Eun Ra, Seung-Yeob Song
    Korean Journal of Breeding Science.2025; 57(4): 345.     CrossRef
  • Amino acids and BCAA composition of Mungbean (Vigna radiata L.) seeds and sprouts for plant-based protein applications
    Chanwook Kim, Seyoung Jeon, Yeon-Ji Jo, Jungmin Ha
    Scientific Reports.2025;[Epub]     CrossRef
  • Effects of Phytohormones on Morphological and Biochemical Traits in Mungbean Sprouts
    Hakyung Kwon, Byeong Cheol Kim, Minseo Kang, Sung Don Lim, Jungmin Ha, Miguel Rebollo-Hernanz
    Journal of Food Quality.2025;[Epub]     CrossRef
  • Metabolic Discrimination of Mungbean (Vigna radiata L.) Sprout Depending on Growth Time from Multivariate Analysis of FT-IR Spectroscopy Data
    Song Yie Park, Yeong Jae Ah, Eun Ji Suh, Eun Bin Choi, Mi Ja Lee, Han Gyeol Lee, Woo Duck Seo, Yu-Na Kim, Seung-Yeob Song
    Korean Journal of Breeding Science.2024; 56(3): 269.     CrossRef
  • Application of Deep Learning Technology for Phenotyping Tissue Specific Length of Sprout Vegetables Using YOLOv8
    Yeonghun Cho, Jae Yoon Kim, Jungmin Ha
    Korean Journal of Breeding Science.2024; 56(4): 416.     CrossRef
  • Metabolic profiling and expression analysis of key genetic factors in the biosynthetic pathways of antioxidant metabolites in mungbean sprouts
    Byeong Cheol Kim, Insu Lim, Jungmin Ha
    Frontiers in Plant Science.2023;[Epub]     CrossRef
  • Tissue-Specific Metabolic Profiling of Mungbean (Vigna radiata L.) Genotypes with Different Seed Coat Colors
    Seyoung Jeon, Byeong Cheol Kim, Jungmin Ha, Walid Elfalleh
    Journal of Food Quality.2023; 2023: 1.     CrossRef
  • Measurement of Physical Trait and Antioxidant Capacity of Tissues of Mungbean (Vigna radiata L.) Sprouts
    Byeong Cheol Kim, Jungmin Ha
    Korean Journal of Breeding Science.2022; 54(2): 75.     CrossRef
  • Metabolomic and transcriptomic changes in mungbean (Vigna radiata (L.) R. Wilczek) sprouts under salinity stress
    Insu Lim, Minseo Kang, Byeong Cheol Kim, Jungmin Ha
    Frontiers in Plant Science.2022;[Epub]     CrossRef
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Genetic Analysis of Anthocyanin Pigmentation in Sterile Lemma and Apiculus in Rice
Woo-Jin Kim, Cheryl Adeva, Hyun-Sook Lee, Yun-A Jeon, Kyu-Chan Shim, Sang-Nag Ahn
Plant Breed. Biotech. 2020;8(4):378-388.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.378

Genetic analysis of genes that regulate the color pigmentation of sterile lemma and apiculus has been conducted. “Josaengjado” has small and round grains with purple leaf, sterile lemma and apiculus. In the F2 population from a cross between Josaengjado and Daeribbyeo 1, 246 and 182 plants exhibited purple and straw-white sterile lemma, respectively. It fitted a 9:7 segregation ratio indicating that two complementary genes control the pigmentation in sterile lemma and apiculus. Genetic analysis was performed using the F2:3 and KASP (Kompetitive Allele-Specific PCR) markers. Genes for the coloration of leaf sheath, ligule, sterile lemma, and apiculus were detected on chromosomes 1 and 6. Sequence comparison showed a single nucleotide substitution C (Josaengjado) to A (Daeribbyeo 1) in the second exon of the Rd gene on chromosome 1 leading to a premature stop in Daeribbyeo 1. In C1, a 3-bp deletion in the second exon was detected in Daeribbyeo 1. Haplotype analysis was performed in the Rd and C1 genes of the 78 rice accessions. 78 accessions were divided into 14 groups. A total of 11 and 1 mutation sites were detected in OsC1 and Rd, respectively. The haplotype analysis also confirmed that two complementary genes, Rd and OsC1 are necessary to express anthocyanin pigmentation in sterile lemma and apiculus. To our knowledge, this is the first report to identify genes for the coloration of sterile lemma in rice.

Citations

Citations to this article as recorded by  
  • Genetic dissection and transcriptomic analysis of a novel high‐tillering phenotype in rice derived from weedy rice (Hapcheonaengmi3) and Tongil‐type Rice (Milyang23)
    Kyu‐Chan Shim, Donghyun Jeon, Yun‐A Jeon, Cheryl Adeva, Hyun‐Sook Lee, Ju‐Won Kang, Sa‐Eun Park, Sang‐Nag Ahn, Inkyu Park
    The Plant Genome.2026;[Epub]     CrossRef
  • Identification of a novel mutant allele of the LIKE EARLY STARVATION 1 gene in rice (Oryza sativa L.) using QTL-seq
    Kyu-Chan Shim, HyunJung Kim, Mi-Ra Yoon, Sung-Ho Na, Sa-Eun Park, Sang-Nag Ahn, Thomas H Tai, J Holland
    G3: Genes, Genomes, Genetics.2026;[Epub]     CrossRef
  • Spontaneous mutation in OsABCI8 caused an albino rice mutant induced by transplanting
    Kyu-Chan Shim, Yun-A Jeon, Hyun-Sook Lee, Sang-Nag Ahn, Inkyu Park
    Scientific Reports.2025;[Epub]     CrossRef
  • Genetic analysis and gene mapping of the purple glume tip trait in rice (Oryza sativa)
    Gang Jin, Zhongquan Cai, Yanxi Chen, Ying Ling, Liping Wang, Deyuan Mo
    Crop Breeding and Applied Biotechnology.2024;[Epub]     CrossRef
  • T-DNA insertion mutants of Arabidopsis DA1 orthologous genes displayed altered plant height and yield-related traits in rice (O. sativa L.)
    Kyu-Chan Shim, Ngoc Ha Luong, Thomas H. Tai, Gyu-Ri Lee, Sang-Nag Ahn, Inkyu Park
    Genes & Genomics.2024; 46(4): 451.     CrossRef
  • A Frameshift Mutation in the Mg-Chelatase I Subunit Gene OsCHLI Is Associated with a Lethal Chlorophyll-Deficient, Yellow Seedling Phenotype in Rice
    Kyu-Chan Shim, Yuna Kang, Jun-Ho Song, Ye Jin Kim, Jae Kwang Kim, Changsoo Kim, Thomas H. Tai, Inkyu Park, Sang-Nag Ahn
    Plants.2023; 12(15): 2831.     CrossRef
  • Identification of QTLs for Cold Tolerance at Seedling Stage Using a Population Derived from an Inter-specific Cross in Rice
    Kyu-Chan Shim, Yeo-Tae Yun, Ju-Won Kang, Sang-Nag Ahn
    Plant Breeding and Biotechnology.2022; 10(4): 282.     CrossRef
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Genetic Parameters and Multivariate Analysis to Determine Secondary Traits in Selecting Wheat Mutant Adaptive on Tropical Lowlands
Muh Farid, Nasaruddin Nasaruddin, Yunus Musa, Muhammad Fuad Anshori, Ifayanti Ridwan, Jekvy Hendra, Gatot Subroto
Plant Breed. Biotech. 2020;8(4):368-377.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.368

One of approaches to maintain the yield stability of the lowland tropical wheat is the use of secondary traits in the selection process. The identification of these characters requires a statistical approach in the form of genetic parameter analysis and multivariate analysis. The
objective
of this study was to determine the secondary traits of adaptive wheat mutants in the lowlands through the use of genetic parameters and multivariate analysis on the parameters. The study consisted of three field trials conducted in three different regencies, namely Jeneponto (135 m above sea level (asl)), Maros (100 m asl) and Bantaeng (125 m asl). The study used a nested design, where replications were nested in the environments. The genotype factors consisted of 20 genotypes repeated three times. 11 characters were observed including vegetative and reproductive characters. The analysis used consisted of repeatability, correlation, cluster analysis, principal component analysis, factor analysis, and cross print analysis. The overall results of the analysis indicate that the number of productive tillers is the main secondary trait for the selection of adaptive wheat in the lowlands. The character can be recommended for selection criteria in testing wheat lines in the lowlands to make an effective selection.

Citations

Citations to this article as recorded by  
  • Stability and adaptability analyses to identify suitable high-yielding maize hybrids using PBSTAT-GE
    Muhammad Azrai, Muh. Farid, Amin Nur, Roy Efendi, Salengke Salengke, Yunus Musa, Baharuddin Patandjengi, Tutik Kuswinanti, Sulaeha Thamrin, Willy Bayuardi Suwarno, Nining Nurini Andayani, Bunyamin Zainuddin, Hishar Mirsam, Slamet Bambang Priyanto, Suriani
    Open Agriculture.2025;[Epub]     CrossRef
  • Comprehensive evaluation of nitrogen fertilization impact on early maturing rice varieties using multivariate analysis and vegetation indices
    Yunus Musa, Rusnadi Padjung, Nasaruddin Nasaruddin, Muh Farid, Andang Suryana Soma, Achmad Kautsar Baharuddin, Muh. Fikri Al Qautzar, Resky Maulidina Fakhri, Madonna Casimero, Amin Nur, Mahmoud F. Seleiman, Majed Alotaibi, Nawab Ali, Muhammad Fuad Anshori
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
  • Multivariate analysis and image-based phenotyping of cayenne fruit traits in selection and diversity mapping of multiple F1 cross lines
    Muhammad Fuad Anshori, Yunus Musa, Novaty Eny Dungga, Nuniek Widiayani, Arfina Sukmawati Arifin, A. Masniawati, Firmansyah, Muh Farid, Andi Dirpan, Andi Isti Sakinah, Nirwansyah Amier
    Reproduction and Breeding.2024; 4(4): 194.     CrossRef
  • A new concept in assessing adaptability index for superior potential cropping intensity in early-maturing rice
    Muhammad Fuad Anshori, Yunus Musa, Muh Farid, Muh Jayadi, Abd Haris Bahrun, Amir Yassi, Andi Amran Sulaiman, Yi Cheng Huang, Madonna Casimero, Lizzida Llorca, Willy Bayuardi Suwarno, Muh Mukhtadir Putra, Hasil Sembiring, Bambang Sapta Purwoko, Daniel O. W
    Frontiers in Sustainable Food Systems.2024;[Epub]     CrossRef
  • Selection of M5 mutant lines of wheat (Triticum aestivum L.) for agronomic traits and biomass allocation under drought stress and non-stressed conditions
    Athenkosi Makebe, Hussein Shimelis, Jacob Mashilo
    Frontiers in Plant Science.2024;[Epub]     CrossRef
  • Combining Image-Based Phenotyping and Multivariate Analysis to Estimate Fruit Fresh Weight in Segregation Lines of Lowland Tomatoes
    Muh Farid, Muhammad Fuad Anshori, Riccardo Rossi, Feranita Haring, Katriani Mantja, Andi Dirpan, Siti Halimah Larekeng, Marlina Mustafa, Adnan Adnan, Siti Antara Maedhani Tahara, Nirwansyah Amier, M. Alfan Ikhlasul Amal, Andi Isti Sakinah
    Agronomy.2024; 14(2): 338.     CrossRef
  • Interaction of Principal Component Analysis and Normalized Difference Vegetation Index (NDVI) Using Drone in Evaluation of the Vegetative Phase of Rice
    Andi Isti Sakinah, Muh Farid, Yunus Musa, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Hari Iswoyo
    Asian Journal of Plant Sciences.2024; 23(1): 88.     CrossRef
  • Multivariate and Association Analyses of Quantitative Attributes Reveal Drought Tolerance Potential of Wheat (Triticum aestivum L.) Genotypes
    Mueen Alam Khan, Muhammad Waseem Akram, Muhammad Iqbal, Hafiz Ghulam Muhu-Din Ahmed, Abdul Rehman, Hafiz Syed M. Arslan Iqbal, Beena Alam
    Communications in Soil Science and Plant Analysis.2023; 54(2): 178.     CrossRef
  • Sustainability approach in cropping intensity (CI) 400 through optimizing the dosage of compost and chemical fertilizers to early-maturing rice varieties based on multivariate analysis
    Yunus Musa, Muh Farid, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Ahmad Fauzan Adzima, Muhammad Farid Maricar, Amran Sulaiman, Yi Cheng Huang, Hari Iswoyo, Abd Haris Bahrun, Adnan Adnan
    Journal of Agriculture and Food Research.2023; 14: 100907.     CrossRef
  • Effect of salinity on seed germination and seedling growth of bullet cultivar of chilli (Capsicum annuum L.)
    Anup Kumar Sarkar, Satyajit Oraon, Subrata Mondal, Sanjoy Sadhukhan
    Brazilian Journal of Botany.2023; 46(3): 513.     CrossRef
  • Salinity tolerance selection of doubled-haploid rice lines based on selection index and factor analysis
    Muhammad Fuad Anshori, Bambang Sapta Purwoko, Iswari Saraswati Dewi, Willy Bayuardi Suwarno, Sintho Wahyuning Ardie
    AIMS Agriculture and Food.2022; 7(3): 520.     CrossRef
  • Cluster heatmap for screening the drought tolerant rice through hydroponic culture
    A I Sakinah, Y Musa, M Farid, M F Anshori, M Arifuddin, A A Laraswati
    IOP Conference Series: Earth and Environmental Science.2021; 807(4): 042045.     CrossRef
  • Interactions of Growth Environmental and Application of GA3 Concentration On Shallot Productivity
    A R Handayani, E Syam’un, F Ulfa
    IOP Conference Series: Earth and Environmental Science.2021; 921(1): 012051.     CrossRef
  • Interaction of Genetic and Cultivation Technology in Maize Prolific and Productivity Increase
    A. Dwie Mochammad , Rusnadi Padjung, Muh Farid, Abd Haris Bahrun, Muhammad Fuad Ansho, Nasaruddin ., Ifayanti Ridwan, Amin Nur, Muh Taufik
    Pakistan Journal of Biological Sciences.2021; 24(6): 716.     CrossRef
  • Image Based-Phenotyping and Selection Index Based on Multivariate Analysis for Rice Hydroponic Screening under Drought Stress
    Adinda Asri Laraswati, Rusnadi Padjung, Muh Farid, Nasaruddin Nasaruddin, Muhammad Fuad Anshori, Amin Nur, Andi Isti Sakinah
    Plant Breeding and Biotechnology.2021; 9(4): 272.     CrossRef
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Analysis of Qualitative and Quantitative Traits to Identify Different Chinese Jujube Cultivars
Sea-Hyun Kim, Jae-Ik Nam, Chul-Woo Kim
Plant Breed. Biotech. 2019;7(3):175-185.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.175

Chinese jujube (Ziziphus jujuba Mill.) is highly resistant to environmental stress and can be easily cultivated, thus many jujube cultivars are being developed. However, the same cultivars had been cultivated with different names. Thus, systematic management is required to protect the intellectual property of different varieties. To aid systematic control of jujube cultivars, this study presents efficient markers for distinguishing cultivars through identification of morphological characteristics and relationships among 25 jujubes. Among 10 qualitative characteristics, flowering time, fructification time, presence of thorns, and shape of fruit were found to be useful traits for the cultivar identification. In the results of principal component analysis, 3 principal components (PC) represented 73% for the total variations. PC1 showed high positive correlations with fruit–related characteristics and PC2 formed a cluster with leaf-related characteristics. Therefore, the differences in fruit and leaf were identified as useful traits for the cultivar identification. According to the results of cluster analysis, which largely divided cultivars into 4 clusters, Sour jujube 2, with smaller fruits and leaves, was separated first. Cluster II included Chinese cultivars with large fruit sizes, such as Dalizao, Dabailing, Damaya, and Daguazao. Three Korean cultivars were grouped with Bokjo, Panzao, Zanhuangdazao, and Jinsi No. 3, and the remaining 13 cultivars formed a separate cluster.

Citations

Citations to this article as recorded by  
  • Discriminative Power of Geometric Parameters of Different Cultivars of Sour Cherry Pits Determined Using Machine Learning
    Ewa Ropelewska, Kadir Sabanci, Muhammet Fatih Aslan
    Agriculture.2021; 11(12): 1212.     CrossRef
  • The Application of Machine Learning for Cultivar Discrimination of Sweet Cherry Endocarp
    Ewa Ropelewska
    Agriculture.2020; 11(1): 6.     CrossRef
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Phenotypic Stability for Selected Traits of Some Cowpea Lines in Nigerian Agro-ecologies
Mohammed F. Ishiyaku, Victoria M. Yilwa, Bir B. Singh, Olusoji O. Olufajo, Aminu A. Zaria
Plant Breed. Biotech. 2017;5(2):67-77.   Published online June 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.2.67

Eight advanced breeding lines of cowpea [Vigna unguiculata (L.) Walp.] were evaluated in a multi-environment trial for phenotypic stability of grain yield, maturity and grain size. There was highly significant genotype × environment interaction for all traits. Simple correlation coefficient was computed to ascertain the level of relationship between stability parameters and agronomic traits. Line IT93K-452-1 was identified as most stable genotype and can be grown all over the Nigerian cowpea belt. The line IT90K-503-1 was the most unstable genotype in terms of grain yield and was also nonresponsive to the environment. However, it is environment specific. IT93K-452-1 has relatively stable maturity across environments. The result suggests that IT93K-452-1 will mature around the average of 65 days irrespective of the location in Nigeria. Lines IT95K-1455 and IT90K-503-1, whose stability parameter values were high, means that in respect of maturity, they are photo-thermo sensitive. They can mature early or delayed depending on the photo-thermal environment. However, lines such as IT93K-273-2-1, IT93K-129-4, IT93K-452-1 and IT86D-719 are photo-thermo insensitive. Line IT93K-1543 was identified as the most desirable genotype in terms of grain size. This is followed by IT93K-452-1. The line IT90K-503-1 had small but unstable seed size. This work identified IT93K-452-1 and IT93K-273-2-1 as the most stable genotypes for yield and maturity. Grain yield was highly positively correlated with bi and R2 but was negatively correlated with Sd2i. Maturity was negatively highly correlated with bi, Wi, and CVi. Grain size on the other hand is not correlated with any of the parameters.

Citations

Citations to this article as recorded by  
  • Genotype x environment interaction effect on grain yield of cowpea (Vigna unguiculata (L.) Walp) in Deciduous forest and Sudan savanna ecologies of Ghana
    Francis Kusi, Richard Adu Amoah, Patrick Attamah, Shaibu Alhassan, Damba Yahaya, Justice Frederick Awuku, Jerry A. Nbonyine, Isaac Amegbor, Gloria Mensah, Issah Sugri, Mukhtaru Zakaria, Salim Lamini, Peter Asungre, Emmanuel Asibi Aziiba, Julius Yirzagla,
    PLOS ONE.2025; 20(1): e0314464.     CrossRef
  • Heritability and expression of yield and yield components in cowpea, an underutilized crop in Africa
    Milcah Bogaleng Matjeke, Maryke Tine Labuschagne, Abe Shegro Gerrano, Adré Minnaar-Ontong, Ntombokulunga Wedy Mbuma
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
  • Genetic variability, inter-character correlation, and stability performance in cowpea for drought tolerance
    Olakunle Opeyemi Sansa, Omolayo Johnson Ariyo, Monininuola Adefolake Ayo-Vaughan, Ukoabasi Okon Ekanem, Solomon Okon Ntukidem, Michael Terrance Abberton, Olaniyi Ajewole Oyatomi
    Journal of Crop Improvement.2025; 39(1): 43.     CrossRef
  • Registration of ‘UAM15-2157-4’ cowpea cultivar combining high yield and market demand traits for the savanna regions of West Africa
    L. O. Omoigui, G. Ekeruo, A. S. Shaibu, A. Y. Kamara, T. Iorlamen, O. O. Olufajo, O. B. Eseigbe, R. Solomon, M. S. Ugbaa, M. P. Timko
    Genetic Resources and Crop Evolution.2025; 72(S1): 353.     CrossRef
  • AMMI and GGE biplot analysis of genotype by environment interaction and yield stability in early maturing cowpea [Vigna unguiculata (L) Walp] landraces in Ethiopia
    Yirga Kindie, Bulti Tesso, Berhanu Amsalu
    Plant-Environment Interactions.2022; 3(1): 1.     CrossRef
  • Genotype by environment interaction and yield stability of cowpea (Vigna unguiculata (L.) Walp.) genotypes in moisture limited areas of Southern Ethiopia
    Yasin Goa, Hussein Mohammed, Walelign Worku, Elias Urage
    Heliyon.2022; 8(3): e09013.     CrossRef
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Phenotypic Analysis of Seed Yield and Yield Components in Cowpea (Vigna unguiculata L., Walp)
Olawale Mashood Aliyu, Bukola Oluwaseun Makinde
Plant Breed. Biotech. 2016;4(2):252-261.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.252

Poor seed yield remains a great challenge for cowpea production in sub-Sahara Africa and continuous evaluation of available genetic resource to develop high and stable yielding varieties is the panacea to this regional food security conundrum. In this study, 21 cowpea breeding lines were evaluated for phenotypic analysis of seed yield components for two years in a randomized complete block design of 3 replications. All the yield components exhibited significant genotypic variation, while flowering, pod maturity and seed yield traits recorded significant variation for years and its interactions. These cowpeas, which are predominantly early-medium maturing biotypes, exhibited relative phenotypic stability for the yield components across years (seasons) except seed yield, being a final product of complex physiological process. Relationships between flowering/pod maturity and seed size were positive and significant. By contrast, pods/plant, seeds/plant and total seed yield recorded negative correlations with pod maturity. However, seeds/plant and pods/plant are the most contributory components to seed-yield with correlation coefficients of r=0.95, 0.89, respectively. Although seed size had negative correlation with seeds/pod, but strong linkage between seed number (seeds/pod, seeds/plant) and seed yield; and additive gene nature of seed size, suggest a weak size-number trade-off in cowpea. Genetic variance components indicates high genetic contributions over non-genetic to plant phenotypic variability with high heritability values (0.75–0.91). Six cowpea lines (IT10K-837-1, IT07K-299-6, IT10K-815-5, IT10K-817-7, IT08K-150-24, and IT11K-61-82) with multiple quality yield traits could be selected for immediate farmers use and future genetic improvement.

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Genotypic Variation among Okra (Abelmoschus esculentus (L.) Moench) Germplasms in South India
Kishor Doddanakatte Shivaramegowda, Arya Krishnan, Yogeesh Kebbahalli Jayaramu, Vinod Kumar, Yashoda, Hee-Jong Koh
Plant Breed. Biotech. 2016;4(2):234-241.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.234

Thirty-six okra germplasms were grown and evaluated for yield and yield related traits at the Department of Plant Breeding and Genetics, Vellayani, Trivandrum, Kerala. The germplasms studied possessed sufficient variability for all the traits. High genotypic coefficient of variation (GCV) and phenotypic coefficient of variation (PCV) were noticed for almost all characters and narrow difference between GCV and PCV suggest that environmental influence is minimal for the traits studied. High estimates of heritability coupled with high to moderate genetic advance as percent over mean was recorded for all the characters considered. Yield had positive and significant association with number of fruits per plant, fruit weight, fruit girth and number of primary branches indicating that selection based on these characters may improve yield. Principal component analysis indicated that first three principal components contributed for sixty percent total variation among ten characters describing accessions. The cluster analysis revealed that hybridization of cluster I with cluster IV would be beneficial to develop promising varieties under diverse climatic conditions in India.

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Evaluation of SSR and SNP Markers for Molecular Breeding in Rice
Zennia Jean Gonzaga, Kashif Aslam, Endang M. Septiningsih, Bertrand C.Y. Collard
Plant Breed. Biotech. 2015;3(2):139-152.   Published online June 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.2.139

Simple sequence repeats (SSRs) have been the marker of choice for rice molecular breeding due to the high level of polymorphism, technical simplicity and low cost. Recent advances in rice genomics have led to the discovery of abundant single nucleotide polymorphism (SNPs) which have enormous potential for rice molecular breeding. To assess both marker systems for molecular breeding in rice, SSR and SNP markers were evaluated on a set of 23 genotypes representing indica germplasm for their usefulness in molecular research and breeding program. Seven hundred SSR and sequence tagged sites (STS) markers and 384 SNPs were screened for polymorphism. Highly polymorphic markers based on polymorphic information content (PIC) values were identified, which will be useful for molecular breeding. Data was used to identify an “indica genotyping set” based on high level of polymorphism, chromosome position and marker quality which will provide kits of markers for marker assisted selection (MAS). Genetic diversity analysis using SSR data was more consistent with pedigrees compared to analysis with SNP data indicating that more than 384 SNPs are required when elite indica breeding material is used. The results also indicated that there were polymorphic “blind spots” for the fixed SNP set suggesting that SSRs could still be used to complement fixed-SNP genotyping platforms for some molecular breeding applications.

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Phenotypic Stability Analysis of Yield Components in Cashew (Anacardium occidentale L.) Using Additive Main Effect and Multiplicative Interaction (AMMI) and GGE Biplot Analyses
Olawale M. Aliyu, Oluwatosin O. Adeigbe, Oluwafemi O. Lawal
Plant Breed. Biotech. 2014;2(4):354-369.   Published online December 31, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.4.354

Perennial poor fruit-set and variability in tree yield are among major problems of cashew nut production. Thus, development of improved stable genotypes would be a sustainable strategy to address this perpetual problem in order to boost income and livelihood of many smallholder farmers of this important commodity crop. Here, we have applied additive main effect and multiplicative interaction (AMMI) and genotype, genotype by environment (GGE) biplot analysis to a 3-year multi-locational trial data on nine yield component characters of cashew to evaluate phenotypic stability across diverse environments. Variance analysis showed significant variability in the cashew genotypes and strong influence of genotype by environment (GxE) on tree yield as none of the genotypes was stable for any of the yield components across locations. GxE data showed that a substantial portion of the variation was explained by the genotype (highly heritable), accounting for between 10% and 87% of the variation, while the environment accounted for between 0.7% and 37%. Data showed significant higher values of interaction (GxE) than the respective values for environment, and were mostly captured and could be explained by the first principal component axis (IPCA 1) for all the yield component characters. There was an inverse relationship between stability and yield as the best three yielding genotypes (KT_26, IW_222 and IW_31) were found to be the most unstable. Among the yield component tested, hermaphrodite flowers per panicle, nuts per panicle, nuts per tree, nut weight, and tree fruiting efficiency were identified to be critical components for nut yield. Although there was wide variation between the three environments evaluated, the data effectively identified two mega-environments (ME), and two superior genotypes (IW_222 and KT_26) suitable for these two mega-environments. The GxE complex exposes the short-comings of broad recommendations of common agronomic-husbandry technologies across diverse cashew ecologies as each mega-environment would require specific adaptable technologies for optimal plant output. Above all, the data presented here underscore the importance of multi-locational evaluation of genotypes for varietal development in cashew.

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