Simple sequence repeats (SSRs) have been the marker of choice for rice molecular breeding due to the high level of polymorphism, technical simplicity and low cost. Recent advances in rice genomics have led to the discovery of abundant single nucleotide polymorphism (SNPs) which have enormous potential for rice molecular breeding. To assess both marker systems for molecular breeding in rice, SSR and SNP markers were evaluated on a set of 23 genotypes representing
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There is a rising interest of moving towards hybrid breeding in outcrossing species. Self-compatibility (SC), which occurs at low rates in self-incompatible species, could be used to develop inbred lines, a key requirement for hybrid breeding programs. In perennial ryegrass, the existence of SC independent from the self-incompatibility (SI) loci S and Z has been reported.
In this study, we used 98 F2 individuals from a cross between a self-compatible ecotype and an individual of the VrnA mapping population that were tested with markers for two candidate linkage groups 3 and 5 as well as markers for candidate regions at the S and Z locus. We were able to determine a tentative location of a SC locus and tested the possible interaction to other loci involved in SI and SC. This information will help to fine map the SC locus, and for marker-assisted selection.
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