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Research Article

Inheritance of dlm and ti genes in Soybean

Mi Kyung Sung1, Min Hwan Kim1, Hyung Jin Seo1, Jong Il Chung1,*
Plant Breeding and Biotechnology 2013;1(1):9-13.
Published online: March 31, 2013

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*Corresponding author Jong Il Chung, jongil@gnu.ac.kr, Tel: +82-55-772-1872, Fax: +82-55-772-1879
• Received: March 2, 2013   • Revised: March 3, 2013   • Accepted: March 13, 2013

Copyright © 2013 The Korean Society of Breeding Science

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  • dlm mutant newly identified displays necrotic spots with chlorotic halo despite the absence of any detectable pathogens in soybean. Kunitz trypsin inhibitor (KTI) protein of mature soybean seed is a main anti-nutritional factor and is controlled by Ti allele in soybean seed. The objective of this research was to determine the linkage or independent assortment between dlm allele and ti allele. F2 population was made by crossing between “Gaechuck2ho” (DlmDlmtiti) and T363 (dlmdlmTiTi) parents. The normal leaf or disease lesion mimic leaf trait of parents and F2 individual plants was recorded at R2 and R3 growth stage from field. The random seeds from individual F2 plants harvested were analysed electrophoretically to determine the presence of the KTI protein. The disease lesion mimic trait was matched to 3 : 1 ratio at the 0.01 levels of probability. The absence of the KTI protein was controlled by a single recessive gene. In F2 generation, the ratios of 102 Ti_Dlm_: 21 Ti_dlmdlm : 24 titiDlm_ : 4 titidlmdlm were observed. Segregation ratio gave a good fit to the 9 : 3 : 3 : 1 ratio based on F2 generation at the 0.01 levels of probability. The data confirmed that dlm allele controlling disease lesion mimic trait was inherited independently with the ti allele controlling absence of KTI protein in soybean.
  • Key words: dlm, ti, Independent assortment, Linkage, Kunitz trypsin inhibitor, Soybean
A new phenotypic traits are useful in genetic and breeding studies. By gamma-irradiated treatment, disease lesion mimic mutant have been identified in soybean [Glycine max (L.) Merr.,] leaf. Mutant displays necrotic spots with chlorotic halo despite the absence of any detectable pathogens. The mutant was behaved as a single recessive allele, designated dlm (Chung et al. 1998). The dlm allele controlling disease lesion mimic trait is useful in basic research aimed at better understanding disease hypersensitive response and programmed cell death in soybean. Kim et al. (2005) reported that dlm mutant was light-dependent and observed that the mutant showed a defect in starch degradation of chloroplasts during diurnal fluctuations. The position of dlm allele on linkage group were not reported. However, inheritance between dlm trait and a few morphological traits was identified. The dlm allele was inherited independently with the P1 allele (controlling glabrous trait), the y9 allele (controlling chlorophyll-deficient leaf trait), the f allele (controlling fasciation stem trait) and the lf2 allele (controlling seven-leaflet trait) in soybean (Jeong et al. 2007).
Soybean protein has been widely used in the food industry due to excellent nutritional quality and health benefit. But, the several antinutritional factors present in raw mature soybean seeds. Different trypsin inhibitors have been reported to be present in soybeans (Birk 1961, Frattali and Steiner 1968, Kunitz 1945), but much of the soybean trypsin inhibitor activity is thought to be due to Kunitz trypsin inhibitor (Rackis et al. 1962). Kunitz trypsin inhibitor (KTI) protein of mature soybean seed is a main anti-nutritional factor in soybean seed. KTI protein is a small and non-glycosylated protein containing 181 amino acid residues with 21.5 kDa. KTI protein was first isolated and crystallized from soybean seeds by Kunitz (1945). The Kunitz trypsin inhibitor protein strongly inhibits trypsin, thus reducing food intake by diminishing digestion and absorption. In USDA germplasm collection, two soybean accessions (PI157440 and PI196168) have been identified which lacks KTI protein (Orf and Hymowitz 1979). Five electrophoretic forms of KTI have been discovered. The genetic control of four forms, Tia, Tib, Tic, and Tid, has been reported as a codominant multiple allelic series at a single locus (Sing et al. 1969; Hymowitz and Hadley 1972; Orf and Hymowitz 1979). Orf and Hymowitz (1979) also found out that the fifth form does not exhibit a soybean trypsin inhibitor-A2 band and is inherited as a recessive allele designated as ti. The Ti locus has been located on linkage group 9 in the classical linkage map of soybean (Hildebrand et al. 1980; Kiang 1987), which was integrated in linkage group A2 (chromosome 8) of the USDA/Iowa State University soybean molecular linkage map (Cregan et al. 1999). The genetic removal of the KTI protein will improve the nutritional value of soybean. Oliveira et al. (2007) observed that total isoflavone contents in KTI free soybean seed were higher than those in the normal soybean seed. Relationship between leaf trait and seed compositional trait is useful in genetic and breeding research of soybean. The objective of this research was to determine the linkage or independent assortment between dlm allele and ti allele.
Genetic materials
Two parents were used to develop F2 populations. “Gaechuck2ho” parent has titi genotype (KTI protein absent in mature seed) and normal leaf trait (DlmDlm genotype). T363 parent has the dlm allele that controls disease lesion mimic trait in leaves (dlmdlm genotype) and has KTI protein in mature seed (TiTi genotype). The seeds of “Gaechuck2ho” and T363 parents were planted to cross in a greenhouse. The crosses of “Gaechuck2ho” (DlmDlmtiti) × T363 (dlmdlmTiTi) were made and F1 seeds were obtained. F1 seeds obtained were planted in a greenhouse. F1 hybridity was confirmed on morphological traits. F2 seeds from F1 plant confirmed were harvested. The seeds of parent and F2 were planted in the field in Jun 2011. The normal leaf or disease lesion mimic leaf trait of parents and F2 individual plants was recorded at R2 and R3 growth stage from field.
Determination of Kunitz trypsin inhibitor protein
Crude protein from parent seed and random seed from each F2 plant harvested was extracted to determine the presence (‘+’) or absence (‘−’) of KTI protein electrophoretically. Seed coats were removed and were ground. The samples were incubated for 30 min (at room temperature) in 1 ml Tris-HCl, pH 8.0, containing 1.56% v/v β-mercaptoethanol. After centrifugation, 50 μl of the supernatant was added to an equivalent amount of 5X sample buffer [10% w/v sodium dodecyl sulfate (SDS), 50% v/v glycerol, 1.96% v/v β-mercaptoethanol, 1M Tris-HCl, pH 6.8]. The samples were boiled at 97? for 5 min and then centrifuged. Two microliters of the supernatant were loaded on a 12% acrylamide SDS polyacrylamide gel electrophoresis (SDS-PAGE) medium gels in Owl Separation Systems Inc (Model : P9DS, Portsmouth, NH USA). Electrophoresis was performed at 120 V for 7 hrs. Gels were stained overnight in an aqueous solution of 0.25 g coomassie blue R250, 10% acetic acid, and 45% methanol. The gels were then destained with destaining solution (5% acetic acid, 14% methanol) for several hours. A Wide-Range SDS-PAGE molecular mass standard (Sigma MarkerTM, Product Code: M4038, St. Louis MO USA) containing 21.5 kDa (for KTI protein) was used to aid recognition of samples lacking KTI protein. Chi-square analysis was used to test the goodness-of-fit of observed ratios with expected ratios for independent assortment or linkage.
Leaf trait of F1 plant obtained from the cross of “Gaechuck2ho” and T363 parents was normal. A necrotic spot on the leaf of F1 plant was not observed. A total of 157 F2 plants were grown in field. Disease lesion mimic trait was segregated in F2 population (Fig. 1). 126 F2 plants showed the normal leaf and 25 F2 plants showed disease lesion mimic trait (Table 1).
Chi-square value of 5.74 was higher than critical point of 3.84 at the 0.05 levels of probability and the value was lower than 6.635 point of 0.01 levels of probability. The disease lesion mimic trait was matched to 3 : 1 ratio at the 0.01 levels of probability. Previous studies observed that disease lesion mimic trait in soybean leaf was inherited as a single recessive gene at the 0.05 levels of probability (Chung et al. 1998; Jeong et al. 2007). Deviation from the 3 : 1 ratio at the 0.05 levels of probability might be due to the small population size and death of a few plants with disease lesion mimic trait by bad field condition. All mature F1 seeds obtained produced Kunitz trypsin inhibitor (KTI) protein, indicating that the presence of KTI protein was dominant to the absence of it. A part of the SDS-PAGE pattern for KTI protein that appeared in the parents and F2 plants is shown in Figure 2.
Bands for KTI protein were segregated in F2 generation. The segregation of F2 generation for presence and absence of KTI protein is summarized in Table 2.
Among 151 F2 plants harvested, 123 F2 plants showed KTI protein and 28 F2 plants did not show KTI protein. The segregation ration of the presence or absence of the KTI protein in the F2 plants well fitted to an expected 3:1 ratio (χ2=3.35, P=0.066). This result shows that the absence of the KTI protein is controlled by a single recessive gene. Previous studies have shown that KTI protein is inherited as a single recessive allele (Orf and Hymowitz, 1979; Kim et al. 2006; Eun et al. 2012).
The Segregation between dlm allele and ti allele was observed (Table 3). The F2 plant ratios of 102 normal leaf type, KTI protein present: 24 normal leaf type, KTI protein absent: 21 disease lesion mimic type, KTI protein present : 4 disease lesion mimic type, KTI protein absent were observed.
Segregation ratio gave a good fit to the 9 : 3 : 3 : 1 ratio based on F2 generation at the 0.01 levels of probability (Chi-square value = 9.106, P=0.027). Chi-square value of 9.106 was higher than critical point of 7.815 at the 0.05 levels of probability and the value was lower than 11.345 point of 0.01 levels of probability. Generally, the plant with both disease lesion mimic type and KTI protein absent type (titidlmdlm genotype) is very weak in growth. By the bad field condition, a few F2 plant with titidlmdlm genotype was died in early growth stage. By this reason, deviation from the 9 : 3 : 3 : 1 ratio at the 0.05 levels of probability was observed. However, at the 0.01 levels of probability, the data confirmed that dlm allele controlling disease lesion mimic trait was inherited independently with the ti allele controlling absence of KTI protein in soybean. So far, the position of Dlm locus on classical linkage group or molecular linkage map has not been identified. The dlm allele was inherited independently with the P1 allele, the y9 allele, the f allele and the lf2 allele (Jeong et al. 2007). From these results, dlm allele would not be located on classical linkage group 9 (molecular linkage group A2, chromosome 8) in soybean. These results will be useful in genetic and breeding research of soybean.
To determine the genetic relationship between dlm allele controlling disease lesion mimic trait and ti allele controlling the presence or absence of Kunitz trypsin inhibitor (KTI) protein in mature seed, F2 population was developed from the cross of “Gaechuck2ho (DlmDlmtiti) and T363 (dlmdlmTiTi) parents. The leaf trait of parents and F2 individual plants was recorded at R2 and R3 growth stage from field and the random seeds from individual F2 plants harvested was analysed to determine the presence of the KTI protein. A total of 157 F2 plants were grown in field. 126 F2 plants showed the normal leaf and 25 F2 plants showed disease lesion mimic trait. The disease lesion mimic trait was matched to 3 : 1 ratio at the 0.01 levels of probability. Among 151 F2 plants harvested, 123 F2 plants showed KTI protein and 28 F2 plants did not show KTI protein. The segregation ratio of the presence or absence of the KTI protein in the F2 generation was well fitted to an expected 3:1 ratio (χ2=3.35, P=0.066). This result shows that the absence of the KTI protein is controlled by a single recessive gene. The ratios of 102 Ti_Dlm_: 21 Ti_dlmdlm : 24 titiDlm_ : 4 titidlmdlm were observed. Segregation ratio gave a good fit to the 9 : 3 : 3 : 1 ratio based on F2 generation at the 0.01 levels of probability (Chi-square value = 9.106, P=0.027). The data confirmed that dlm allele controlling disease lesion mimic trait was inherited independently with the ti allele controlling absence of KTI protein in soybean.
This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (grant number: 2010-0002513)
Fig. 1
Segregation of normal and disease lesion mimic trait in F2 plant generation obtained from the cross of “Gaechuck2ho” (titiDlmDlm) and T363 (TiTidlmdlm). N: normal leaf type, S: necrotic spots with chlorotic halo leaf type.
pbb-01-09f1.jpg
Fig. 2
Segregation of the Kunitz trypsin inhibitor (KTI) protein in the parents and F2 plants. P1:T363, P2: “Gaechuck2ho”. +, −; presence and absence of KTI protein, respectively.
pbb-01-09f2.jpg
Table 1
Inheritance of dlm allele in segregated F2 plant population obtained from the cross of “Gaechuck2ho” (titiDlmDlm) and T363 (TiTidlmdlm).
Table 1
No. of F2 plant Leaf trait Expected ratio χ2 P
Normal (Dlm_) Necrotic (dlmdlm)
Observed 126 25 3 : 1 5.74 0.016
Expected 113.25 37.75
Table 2
Segregation of the presence or absence of the Kunitz trypsin inhibitor (KTI) protein in F2 generation from the cross between “Gaechuck2ho” and T363.
Table 2
KTI
Protein		 No. of F2 plant χ2 value (3:1) P
Observed Expected
+ 123 113.25 3.35 0.066
− 28 37.75

+, −: presence(+) or absence(−) of KTI protein.

Table 3
Segregation of Ti (ti) and Dlm (dlm) alleles in F2 generations obtained from the cross between “Gaechuck2ho” (DlmDlmtiti) and T363 (dlmdlmTiTi) parents.
Table 3
Genotype F2 generation Expected ratio χ2 P
Observed Expected
Ti_ Dlm_ 102 84.94 9 9.106 0.027
Ti_ dlmdlm 21 28.31 3
titiDlm_ 24 28.31 3
titi dlmdlm 4 9.44 1
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Inheritance of dlm and ti genes in Soybean
Plant Breed. Biotech.. 2013;1(1):9-13.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.009
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Inheritance of dlm and ti genes in Soybean
Plant Breed. Biotech.. 2013;1(1):9-13.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.009
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Inheritance of dlm and ti genes in Soybean
Image Image
Fig. 1 Segregation of normal and disease lesion mimic trait in F2 plant generation obtained from the cross of “Gaechuck2ho” (titiDlmDlm) and T363 (TiTidlmdlm). N: normal leaf type, S: necrotic spots with chlorotic halo leaf type.
Fig. 2 Segregation of the Kunitz trypsin inhibitor (KTI) protein in the parents and F2 plants. P1:T363, P2: “Gaechuck2ho”. +, −; presence and absence of KTI protein, respectively.

Fig. 1

Fig. 2

Inheritance of dlm and ti genes in Soybean

Inheritance of dlm allele in segregated F2 plant population obtained from the cross of “Gaechuck2ho” (titiDlmDlm) and T363 (TiTidlmdlm).

No. of F2 plant Leaf trait Expected ratio χ2 P
Normal (Dlm_) Necrotic (dlmdlm)
Observed 126 25 3 : 1 5.74 0.016
Expected 113.25 37.75

Segregation of the presence or absence of the Kunitz trypsin inhibitor (KTI) protein in F2 generation from the cross between “Gaechuck2ho” and T363.

KTI
Protein		 No. of F2 plant χ2 value (3:1) P
Observed Expected
+ 123 113.25 3.35 0.066
− 28 37.75

+, −: presence(+) or absence(−) of KTI protein.

Segregation of Ti (ti) and Dlm (dlm) alleles in F2 generations obtained from the cross between “Gaechuck2ho” (DlmDlmtiti) and T363 (dlmdlmTiTi) parents.

Genotype F2 generation Expected ratio χ2 P
Observed Expected
Ti_ Dlm_ 102 84.94 9 9.106 0.027
Ti_ dlmdlm 21 28.31 3
titiDlm_ 24 28.31 3
titi dlmdlm 4 9.44 1
Table 1 Inheritance of dlm allele in segregated F2 plant population obtained from the cross of “Gaechuck2ho” (titiDlmDlm) and T363 (TiTidlmdlm).
Table 2 Segregation of the presence or absence of the Kunitz trypsin inhibitor (KTI) protein in F2 generation from the cross between “Gaechuck2ho” and T363.

+, −: presence(+) or absence(−) of KTI protein.

Table 3 Segregation of Ti (ti) and Dlm (dlm) alleles in F2 generations obtained from the cross between “Gaechuck2ho” (DlmDlmtiti) and T363 (dlmdlmTiTi) parents.

Table 1

Table 2

Table 3

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