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Research Article

Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines

Plant Breeding and Biotechnology 2013;1(1):14-23.
Published online: March 31, 2013

1Department of Horticultural Science, Yeungnam University, Gyeongsan 712-749, Korea

2National Institute of Horticultural and Herbal Science, RDA, Suwon 441-706, Korea

*Corresponding author Hae Keun Yun, haekeun@ynu.ac.kr, Tel: +82-53-810-2942, Fax: +82-53-810-4659
• Received: March 3, 2013   • Revised: March 23, 2013   • Accepted: March 25, 2013

Copyright © 2013 The Korean Society of Breeding Science

This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines
Plant Breed. Biotech.. 2013;1(1):14-23.   Published online March 31, 2013
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Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines
Plant Breed. Biotech.. 2013;1(1):14-23.   Published online March 31, 2013
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Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines
Image Image Image Image Image Image
Fig. 1 Quantitative real-time PCR analysis of up-regulated gene expression in ‘Campbell Early’ (left) and ‘MBA’ (right) in response to low temperature. Each bar indicates the SEs (n=3).
Fig. 2 Quantitative real-time PCR analysis of differential gene expression in ‘Muscat Bailey A’ in response to low temperature. Each bar indicates the SEs (n=3).
Fig. 3 Quantitative real-time PCR analysis of down-regulated gene expression in ‘Campbell Early’ (left) and ‘Muscat Bailey A’ (right) in response to low temperature. Each bar indicates the SEs (n=3).
Fig. 4 Venn diagrams of differentially expressed genes in dormant buds of ‘Campbell Early’ and ‘Muscat Bailey A’ grapevines in response to low temperature. A, up-regulated genes; B, down-regulated genes.
Fig. 5 Semi-quantitative RT-PCR analysis to screen genes induced in dormant buds of ‘Campbell Early’ grapevines in response to low temperature. A, RT-PCR gel image; B, quantitative data for gel images from ImageJ analysis.
Fig. 6 Semi-quantitative RT-PCR analysis to screen genes induced in dormant buds of ‘Muscat Bailey A’ grapevines in response to low temperature. A, RT-PCR gel image; B, quantitative data for gel images from ImageJ analysis.
Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines

Sequences of gene specific primers used for real-time PCR analysis.

Name Primer sequences
β-amylase (BMYl) 5′-TCCACTCCCAGAATGGGTTAGA-3′
(XM0022745762) 5′-TTTTAAAACCCGCTCCTTGTCA-3′
Ascorbate peroxidase (APX) 5′-GGTCCGTTTGGGACAATGAA-3′
(EU280159.1) 5′-CGGAAATTGCTCCTTGATCG-3′
ATP dependent Clp protease (ClpP) 5′-TCACCCGACCAAATTGAAGC-3′
(XM00227683.1) 5′-AACTCCCCGATCCTCAGAGC-3′
CBF like transcription factor (CBF1) 5′-GGGTTTGCTCCTTACTCCACCT-3′
(AY390372.1) 5′-CATCATCCCAGCTGAATCCTTT-3′
Cell wall protein (CW) 5′-TTGACAAGAAGCAGCCTGAGTG-3′
(XM_002277798.1) 5′-TGCTGCCATCATAGGGAGTGTA-3′
Chalcone isomerase (CHI) 5′-TACACTGACGCAGAAGCCAAAG-3′
(XM002282072.2) 5′-GACCCATCTTTGGAGAAGCTCA-3′
Chalcone synthesis (CHS) 5′-AGTTCAAGCGCATGTGTGAAAA-3′
(EF192464.1) 5′-CTTCAACCACCACCATGTCTTG-3′
Chitinase-like protein (CLP) 5′-CCGATTTCTTCCAGACCTACCA-3′
(XM002269123.1) 5′-CAAATCCGTGAGGCTGGTAAAC-3′
Cinnarmyl alcohol dehydrogenase2 (CAD2) 5′-GGGCGTCCTCTCTCCATTTC-3′
(NM127743.3) 5′-TCCCCAATGGTTCTTGATGG-3′
Cold acclimation protein WCS120 (WCS120) 5′-CATGGACACGCTGGAGTGAT-3′
(M93342.2) 5′-TGTCCCAGTGCCAGTCGTT-3′
Cold acclimation-specific (CAS15A) 5′-CATGCTGGTGACCACAAAGG-3′
(L12462.1) 5′-TTCCCCATGGTATCCCTCCT-3′
Cold induced protein (CIP) 5′-AAGGGTGCAAAGCAAAGAGATG-3′
(XM002283501.1) 5′-ATGCTGATGATCCATGGGAAGT-3′
Cold regulated protein 15a (COR15a) 5′-ACCTCAACGAGGCCACAAAG-3′
(NM_129815.4) 5′-CCGCAGCTTTCTCAGCTTCT-3′
Cytochrome B5 (CYB5) 5′-AGAGGAGCATCCTGGTGGTG-3′
(XM002283578.1) 5′-GCATGCTGTGGCCCAAAA-3′
Cytochrome p450 (CYP) 5′-TGCAAGCAGTGGTGAAAGAGAC-3′
(CAB85635.1) 5′-GACCTATAGCCCATGCGTTCAC-3′
Dehydrin1 (DHN1) 5′-GGGAGAAGGAAGAAAGGGATGA-3′
(JF896552.1) 5′-GTACTTGTGGCGCTGGTATGC-3′
Dihydroflavonol-4-reductase (DFR) 5′-TGTCTCCAAGACACTGGCTGAG-3′
(JQ308621.1) 5′-TCGGGGAAAGAGCAGTTATGAG-3′
Draught induced protein (R1G1A) (DIP) 5′-CGTCGGTGACATGGATGAAA-3′
(AF503585.1) 5′-TCCTGTTCACGGAAGCCAAT-3′
Endo-β-glucanase precursor (Glu) 5′-GGGGTTATTTGGATCCCATCAT-3′
(AB601116.1) 5′-CAGAAGCGGCGACTTATTGTCT-3′
Flavonol synthase (FLS) 5′-TGCTGAGCAATGGGAAGTACAA-3′
(XM002285805.1) 5′-GAGGTCCGATCATTGCCTTATG-3′
Glutathione peroxidase (GPX) 5′-GAGCACAGGAACCTGGGAGTAA-3′
(XM003631370.1) 5′-AGCACTATCGCCATTCACATCA-3′
Glutathion-S-transferase (GST) 5′-TATAATGTGTGGGCAGCAAACG-3′
(AY156048) 5′-CCAATGTCCAGAAAACCCAAAG-3′
Glycerol-3-phosphate acyltransferase (GPAT) 5′-GAAGCTTCAGCAGGGTCACAAT-3′
(XM002276065.1) 5′-GCTGGGTCTGCTTCTGTTTGAT-3′
Hypersensitive induced response protein (HIR) 5′-TGCATCCTCAAAGGCTTCGT-3′
(AY159555.1) 5′-TGCTGTCTCAGCCTGAAGGA-3′
Late embryogenesis abundant protein (LEA) 5′-CTGACGTGGCAGAAGCAATG-3′
(NM129540.4) 5′-TCGGACGCCATTTTCTTAGC-3′
Lipid transfer protein (LTP) 5′-TGGAAGCAACCATAACATGTGG-3′
(LOC100256718) 5′-TTGAGGCTCTTAATCCCACTGC-3′
Lipoxygenase (LOX) 5′-AACCTTGCGAGGTAATGGTCAA-3′
(XM_002285538.2) 5′-TACCACCAAGTACCGGTCGAGT-3′
Leucine-rich repeats (LRR) 5′-GCCGATTTGGATCTCTCTCTGA-3′
(XM002285517.2) 5′-GTATGCTCACCGCCGAGTTAAT-3′
Manganese superoxide dismutase (Mn-SOD) 5′-GTTCATGAGGGAGGTGGTGAAC-3′
(EU280161.1) 5′-TCTATAGCCCAACCCAGTGAGC-3′
Mitogen-activated protein kinase (MAPK) 5′-CCCTCCTGATGAGGATTCATTG-3′
(AY395740.1) 5′-ATTCGAACTCCATCCCTGTTGA-3′
MYB Transcripton factor (MYB) 5′-CACAAAGTCCATCTCCCCAAAC-3′
(XM_002265978.1) 5′-TCTCCATTTCCTCCTGAACTCG-3′
O-methyltransferase (MT) 5′-CCAGACACCATCCACAACCA-3′
(JF808016.1) 5′-GCAGCAAGGAAGCCAGAATG-3′
Osmotin like protein (OSM) 5′-ACTGCAACTTCGATGCGTCA-3′
(Y10992.1) 5′-TGCGAATTCGGCTAAGGTGT-3′
Pathogen related protein 4a (PR4a) 5′-GCTGCCCAGAGCGCTAGTAA-3′
(AF061329.1) 5′-TCCCAAGTGGAGCAGTAGGC-3′
Pathogen related protein 6 (PR6) 5′-CTGGTGGGAGTTCAGGGAGA-3′
(AY156047.1) 5′-CCAAACACGGACCCTAGTGC-3′
Phenylalanine ammonia lyase (PAL) 5′-TGAACAATGGCGAAAGTGAGAA-3′
(X75967.1) 5′-TCTCTTGCGCTCTCAACCTCTT-3′
Polygalacturonase-inhibiting protein (PGIP) 5′-GTCTTACTCGCCACTCGTCCAT-3′
(AF305093.1) 5′-GTTGGGATTCCACGAAGCTAGA-3′
Proline rich protein2 (PRP2) 5′-CCACCTAAGATTAAACCGCGACT-3′
(XR078193.2) 5′-CGAGGAATCGGAGGAAGCTTAT-3′
Pyrroline-5-carboxylate synthase (P5CS) 5′-AGCCAATGCACTGGAAACAAAT-3′
(AJ005686.1) 5′-CAGGCTTTAGAACCAGCCTTGA-3′
Regulator of cellular molecules (14-3-3) 5′-TCAGGATATTGCAAACGCAGAA-3′
(FJ824803.1) 5′-AAATGCCTGTTTCGCAAGGTTA-3′
Sirtuin (SIRT) 5′-TGATGGCCTCCATCTTCGTT-3′
(JN252254.1) 5′-CACCTCAAAATCCCGCAAGT-3′
Small heat shock protein (sHSP) 5′-CATCTCGAGGTATGGGAACTGG-3′
(XM003634002.1) 5′-GTGTTCTGCTCCACGCTTACCT-3′
Stilbene (STSY) 5′-GGTGCCATTGCAGGAAACTTAC-3′
(X76892.1) 5′-CAAGTGGGTCAAAAGCCTGAGT-3′
Temperature induced lipocalin (TIL) 5′-TCAACGAGACTTGGAGTGATGG-3′
(DQ222993.1) 5′-AACAGGGATAATGGGGAGGAAA-3′
Thaumatin-like protein (TLP) 5′-TTCGCACTTAACCAATTCAGCA-3′
(XM002282928.2) 5′-TGCACCCATTGGAAGTAGGATT-3′
Tonoplast intrinsic protein (TIP) 5′-GGCACCCTAATTTTTGTGTTCG-3′
(XM003632211.1) 5′-ACACTGCCACAAACAGTCCAAG-3′
WRKY transcription facter 10 (WRKY10) 5′-CAGGTGTTCAGTTGATGGATGC-3′
(XM002279371.2) 5′-AAGGGCTTTCGTGGTTATGGAT-3′
β-actin 5′-ACGAGAAATCGTGAGGGATG-3′
(AB372563.1) 5′-ATTCTGCCTTTGCAATCCAC-3′
Table 1 Sequences of gene specific primers used for real-time PCR analysis.