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Volume 8(3); September 2020

Review Articles

Advanced Breeding Technologies for Accelerating Genetic Gain
Ju-Kyung Yu
Plant Breed. Biotech. 2020;8(3):203-210.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.203

The integration of advanced technologies into breeding programs in the 21st century can result in a powerful step change in crop productivity when aligned with components of genetic gain. Genetic gain depends upon four factors: accuracy, selection intensity, genetic variation, and time. It is a useful starting point, as it articulates the parameters breeders operate as part of the crop improvement process. This review article has compiled advanced breeding technologies such as phenomics, genotyping and se-quencing platforms, genome editing, and double haploid, which can be applied to each component of the genetic gain equation. In addition, it has explained the strategies, opportunities, and limitations in order to support breeders in making wise decisions in regard to the technologies and therefore increase efficiency with the breeding programs.

Citations

Citations to this article as recorded by  
  • Haploid facultative parthenogenesis in sunflower sexual reproduction
    Jian Lv, Dawei Liang, Eric Bumann, Virginie Mirleau Thebaud, Huaibing Jin, Changbao Li, Clemence Paris, Yinghui Dan, Chao Li, Ruijie Cui, Xianxia Chen, David Szwerdszarf, Peter Wittich, Bobby Clegg, Agustin Tassara, Hongmei Dan, Xiaolong Tian, Zhiqiang Li
    Nature.2025; 641(8063): 732.     CrossRef
  • Biotechnological Advances to Improve Abiotic Stress Tolerance in Crops
    Miguel Angel Villalobos-López, Analilia Arroyo-Becerra, Anareli Quintero-Jiménez, Gabriel Iturriaga
    International Journal of Molecular Sciences.2022; 23(19): 12053.     CrossRef
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Visiting Bitter Gourd (Momordica charantia) from a Breeding Perspective: A Review
Hari Kesh, Prashant Kaushik
Plant Breed. Biotech. 2020;8(3):211-225.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.211

Bitter gourd is an important vegetable of the family Cucurbitaceae, cultivated mainly in humid and subtropical Asia. Bitter gourd is a vegetable with immense health benefits due to the presence of medicinal compounds such as charantin, vicine, and polypeptide-p, which play essential roles in lessening blood glucose levels. Moreover, bitter gourd fruits are particularly rich in vitamin C, minerals, and carotenes. Here, an effort has been made to critically evaluate the extent of achievements during the enhancement and enactment of bitter gourd breeding programs with the use of latest technologies. Broadening the genetic base of cultivated bitter gourd varieties as a result of enrichment of existing resources by using wild species in breeding programs. Practical seed production technological know-how along with the use of the MS system (male sterility)/chemical-induced sterility procedure is nonetheless vital to cope with market demands. Superior yielding bitter gourd hybrids combining early maturity and resistance to biotic and abiotic stresses are regularly needed to cope with the challenge of bitter gourd production.

Citations

Citations to this article as recorded by  
  • Utilization of crop wild relatives in genetic improvement of bitter gourd, Momordica charantia L.
    S. Devi, R. Neelavathi, C. Indu Rani, R. Kalaiyarasi, K. Gurusamy
    Genetic Resources and Crop Evolution.2026;[Epub]     CrossRef
  • Status of soluble sugars and the related enzymes of Momordica charantia L. seedlings in response to low temperature stress
    V. Devi, M. Kaur Sangha, M. Pathak, P. Kumar, M. Pal
    European Journal of Horticultural Science.2023; 88(6): 1.     CrossRef
  • Advances in melon (Cucumis melo L.) breeding: An update
    Hari Kesh, Prashant Kaushik
    Scientia Horticulturae.2021; 282: 110045.     CrossRef
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  • 3 Crossref
Research Articles
In-vitro Regeneration of Interspecific Hybrids in Eggplant Species via Seed and Embryo Culture
Nusrat Tsemah Afful, Daniel Nyadanu, Richard Akromah, Harry Mensah Amoatey, Fuseini Mohammed, Clement Annor
Plant Breed. Biotech. 2020;8(3):226-237.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.226

Interspecific hybrids of eggplants (Salanum species) are of prime concern to breeders, as they allow introgression of useful genes from wild species to cultivated ones. However, successful hybridization between species is usually very low. This hampers development of improved hybrids. In-vitro culture techniques may be used to overcome interspecific barriers. Seeds and excised embryos obtained from two crosses (Solanum (S.) melongena × S. torvum and S. melongena × S. anguivi) were inoculated on Murashige and Skoog (MS) basal medium supplemented with varying concentrations of 3-indoleacetic acid (IAA) and 6-benzylaminopurine (BAP). Addition of hormones in the culture medium significantly (P < 0.05) improved root and shoot emergence, seed germination and seedling survival. However, excised embryos cultured on the same medium did not develop. Hybrid seeds cultured on MS medium supplemented with different concentrations of IAA and BAP germinated within 6-14 days (SM001-07 × ST004-03) and 4-10 days (SM001-07 × San005-01). Optimal concentration of IAA and BAP for seed germination and seedling survival depended on hybrid type. Regenerated plantlets were successfully transferred to the field after initial acclimatization. High levels of heterosis observed for number of seeds/fruit and fruit breadth suggested an opportunity for developing F1 hybrids with desirable fruit characters for improved fruit yield.

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Phenotypic and Molecular Marker Based Screening of Coastal Rice Landraces under Salt Stress
Md, Faridul Islam, Nasar Uddin Ahmed, Gopal Saha
Plant Breed. Biotech. 2020;8(3):238-251.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.238

Traditional rice landraces of coastal areas in Bangladesh are distinct in respect to their phenotypes, responses to salt stress and yield attributes. In characterization of coastal rice landraces, 46 rice genotypes were tested for salt tolerance at their seedling and reproductive growth stages. Through the cluster analysis following standard evaluation score (SES), genotypes were divided into five categories (highly susceptible, susceptible, moderately tolerant, tolerant and highly tolerant) at their seedling stage. Three coastal genotypes, viz. chorbindi, joyni and kedgrangal mota, were grouped as highly saline tolerant at their seedling stage. In studying reproductive stage salinity screening, based on mean score values obtained from different morphological and yield parameters (plant height, number of effective tillers/hill, number of filled grains, panicle length, 100-grain weight, and straw dry weight), kutiakon and kajolshail were identified as the salinity tolerant landraces while tulsimala, dudhkalom, birindi, bushihara, lalmota, chorboleshor, lalchikon and bashful chikon were found as moderately tolerant to salinity. Finally, the molecular characterization using two simple sequence repeat (SSR) markers, viz., RM493 and RM3412 revealed holde mota, dingamoni, kedgrangal mota, sada mota, laxmima, dishari, lal chikon, kalijira, kalo khaya, khaioz, chorbindi, kajolshail, kutiakon, bamonkhir, dudhmora, sakhorkhora, mota dhan, and sorbimaloti as tolerant landraces. These identified salt-tolerant landraces can be used as promising germplasm resources for breeding salt-tolerant high-yielding rice varieties in the future.

Citations

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  • Diversity Analysis of Bangladeshi Coastal Rice Landraces (Oryza sativa) for Morpho-Physiological and Molecular Markers' Responses to Seedling Salinity Tolerance
    Hafsa Sultana, Uzzal Somaddar, Swadesh Chandra Samanta, Abul Kashem Chowdhury, Gopal Saha
    Plant Breeding and Biotechnology.2022; 10(2): 115.     CrossRef
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Inducing Potential Mutants in Bread Wheat Using Different Doses of Certain Physical and Chemical Mutagens
Ghada M.Sh.M. Abaza, Hassan A. Awaad, Zakaria M. Attia, Khalid S. Abdel-lateif, Mohamed A. Gomaa, Safy M.Sh.M. Abaza, Elsayed Mansour
Plant Breed. Biotech. 2020;8(3):252-264.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.252

Mutation is an effective strategy not only for creating novel variation into crop genome but also for direct releasing adapted and high-yielding genotypes. The current work explores inducing genetic variability in bread wheat using physical and chemical mutagens. Three wheat cultivars were treated by three mutagens; gamma irradiation (five doses; 250, 300, 350, 400 and 450 Gray); laser ray (three treatments; 1, 1.5, and 2 hour exposure) and EMS (three concentrations; 0.2, 0.3 and 0.4%). Besides, a combination of physical (laser) and chemical (EMS) mutagens using middle range of each treatment (1.5 hour laser and 0.3% EMS) was attempted to be applied. The treated seeds were sown in the first season and 4050 M1 plants were harvested. The harvested seeds were sown in the second season, and 78750 M2 plants were obtained. The selection was performed in second season (M2) based on morpho-physiological and yield traits; flag leaf area, flag leaf chlorophyll content, plant height, spike length, grain yield per plant and its components. Based on evaluated traits fourteen mutants were selected to be evaluated in the third generation (M3). The results indicated that the used mutagens had direct impact and significantly improved agronomic traits in derivative mutants compared to their parent cultivars. Moreover, the maximum increment in yield related traits were obtained by 0.4% EMS, 1 and 2 hour-laser, 350-Gy, 1.5 hour × 0.3% EMS and 250-Gy. The obtained results highlighted the importance of these doses of applied mutagens to induce useful genetic variability in bread wheat for improving grain yield and contributing traits.

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    Areej S. Jalal, Mayasar I. Al-Zaban, Mohammed Alqurashi, Eman Fayad, Diana A.H. Al-Quwaie, Leena M. Sait, Salha M. Alshamrani, Nora M. Al Aboud, Uthman Balgith Algopishi, Fatmah Ahmed Safhi
    Physiological and Molecular Plant Pathology.2026; 142: 103055.     CrossRef
  • Characterization of Some Selected Nigeria Indigenous Tomato Varieties Using Morphology and Yield Parameters
    Priscilla Odaku NWOSU-EZEONYE, Happiness Oluomachi EBERECHUKWU, Gbenga Samson OGUNMEFUN, Eno-obong Ntiedo UMOH, Hajara Oyiza YUSUF, Matthew Omoniyi ADEBOLA
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    Yu-Hsiu Li, Jiun-Jang Juo, I-Son Ng
    Bioresources and Bioprocessing.2025;[Epub]     CrossRef
  • Genetic potential and inheritance pattern of agronomic traits in faba bean under free and infested Orobanche soil conditions
    Alaa A. Soliman, Mohamed A. Ibrahim, Manar I. Mousa, Elsayed Mansour, Yuhua He, Haitian Yu
    BMC Plant Biology.2024;[Epub]     CrossRef
  • Deciphering induced variability, character association and multivariate analysis utilizing gamma rays and ethyl methanesulfonate in bread wheat ( Triticum aestivum L.) genotypes with differential grain texture
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    International Journal of Radiation Biology.2024; 100(4): 627.     CrossRef
  • Mutagenic sensitivity, effectiveness and efficiency of gamma rays and ethyl methane sulfonate on soft and semi-hard bread wheat ( Triticum aestivum L.) varieties in the north-western Himalayan climate
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  • Performance and genotypic variability in diverse date palm (Phoenix dactylifera L.) cultivars for fruit characteristics
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    Genetic Resources and Crop Evolution.2024; 71(5): 1759.     CrossRef
  • Genotyping by sequencing; a strategy for identification and mapping of induced mutation in newly developed wheat mutant lines
    Sana Zulfiqar, Mehboob-ur- Rahman, Sayyad Ali Raza Bukhari, Bradley Till, Ruixue Gu, Dongcheng Liu, Susanne Dreisigacker
    Functional & Integrative Genomics.2024;[Epub]     CrossRef
  • Determination of Median Lethal (LD50) and Growth Reduction (GR50) Dose of Gamma Irradiation for Induced Mutation in Wheat
    Sunanda Chakraborty, Sunita Mahapatra, Anubhab Hooi, Md Nasim Ali, Ramesh Satdive
    Brazilian Archives of Biology and Technology.2023;[Epub]     CrossRef
  • Estimating genetic diversity among durum wheat (Triticum durum desf.) landraces using morphological and SRAP markers
    Naser B. Almarri, Salem S. Alghamdi, Mohamed H. ElShal, Muhammad Afzal
    Journal of the Saudi Society of Agricultural Sciences.2023; 22(5): 273.     CrossRef
  • Heritable variability in winter wheat at the interaction of genotype with factors of high genetic activity
    Vladislav Horshchar, Mykola Nazarenko
    Scientific Horizons.2023; 27(1): 80.     CrossRef
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    Arova Zannat, Md Arif Hussain, Abu Habib Md Abdullah, Md Ismail Hossain, Md Saifullah, Fatmah A. Safhi, Khalid S. Alshallash, Elsayed Mansour, Abdelaleim I. ElSayed, Md Sazzad Hossain
    Heliyon.2023; 9(8): e18958.     CrossRef
  • Gamma-rays induced mutations increase soybean oil and protein contents
    Geehan Mohsen, Said S. Soliman, Elsayed I. Mahgoub, Tarik A. Ismail, Elsayed Mansour, Khairiah M. Alwutayd, Fatmah A. Safhi, Diaa Abd El-Moneim, Rahma Alshamrani, Osama O. Atallah, Wael F. Shehata, Abdallah A. Hassanin
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  • Phenotypic and genetic characterization of an Avena sativa L. germplasm collection of diverse origin: implications for food-oat breeding in Chile
    Mónica Mathias-Ramwell, Valentina Pavez, Marco Meneses, Feledino Fernández, Adriana Valdés, Iris Lobos, Mariela Silva, Rodolfo Saldaña, Patricio Hinrichsen
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    Murugesan Tamilzharasi, Dharmalingam Kumaresan, Venkatesan Thiruvengadam, Jegadeesan Souframanien, T. K. S. Latha, N. Manikanda Boopathi, Palaniappan Jayamani
    International Journal of Radiation Biology.2023; 99(8): 1267.     CrossRef
  • Cytogenetic activity of a mutagenic factor with high damaging capacity in winter wheat
    Vladislav Horshchar, Mykola Nazarenko
    Scientific Horizons.2023; 26(9): 131.     CrossRef
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    Feng Lu, Siyu Ruan, Yunliang Li, Yining Wang, Pengfei Xie, Xiaoxue Zhao, Jiapin Chao, Haile Ma
    Applied Microbiology and Biotechnology.2023; 107(13): 4311.     CrossRef
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    A. V. Budagovsky, N. V. Solovykh, O. N. Budagovskaya, M. B. Yankovskaya
    Russian Agricultural Sciences.2022; 48(3): 192.     CrossRef
  • Evaluation of Advanced Mutant Restorer Lines for Enhancing Outcrossing Rate and Hybrid Seed Production of Diverse Rice Cytoplasmic Male Sterile Lines
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    Agronomy.2022; 12(11): 2875.     CrossRef
  • Molecular Genetic Diversity and Combining Ability for Some Physiological and Agronomic Traits in Rice under Well-Watered and Water-Deficit Conditions
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    Plants.2022; 11(5): 702.     CrossRef
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    Plants.2022; 11(9): 1187.     CrossRef
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    Akila Wijerathna-Yapa, Vinita Ramtekey, Buddhini Ranawaka, Bhoja Raj Basnet
    Plants.2022; 11(17): 2273.     CrossRef
  • Winter wheat cytogenetic variability under the action of a chemical supermutagen
    V. Horshchar, M. Nazarenko
    Regulatory Mechanisms in Biosystems.2022; 13(4): 373.     CrossRef
  • Genetic Potential and Inheritance Patterns of Physiological, Agronomic and Quality Traits in Bread Wheat under Normal and Water Deficit Conditions
    Mohamed Kamara, Medhat Rehan, Amany Mohamed, Rania El Mantawy, Ahmed Kheir, Diaa Abd El-Moneim, Fatmah Safhi, Salha ALshamrani, Emad Hafez, Said Behiry, Mohamed Ali, Elsayed Mansour
    Plants.2022; 11(7): 952.     CrossRef
  • Combining Ability and Gene Action Controlling Grain Yield and Its Related Traits in Bread Wheat under Heat Stress and Normal Conditions
    Mohamed M. Kamara, Khaled M. Ibrahim, Elsayed Mansour, Ahmed M. S. Kheir, Mousa O. Germoush, Diaa Abd El-Moneim, Mohamed I. Motawei, Ahmed Y. Alhusays, Mona Ali Farid, Medhat Rehan
    Agronomy.2021; 11(8): 1450.     CrossRef
  • Molecular Genetic Diversity and Line × Tester Analysis for Resistance to Late Wilt Disease and Grain Yield in Maize
    Mohamed M. Kamara, Nasr A. Ghazy, Elsayed Mansour, Mohsen M. Elsharkawy, Ahmed M. S. Kheir, Khaled M. Ibrahim
    Agronomy.2021; 11(5): 898.     CrossRef
  • Assessing the Response of Diverse Sesame Genotypes to Waterlogging Durations at Different Plant Growth Stages
    Mohammad Habibullah, Shahnaz Sarkar, Mohammad Mahbub Islam, Kamal Uddin Ahmed, Md. Zillur Rahman, Mohamed F. Awad, Abdelaleim I. ElSayed, Elsayed Mansour, Md. Sazzad Hossain
    Plants.2021; 10(11): 2294.     CrossRef
  • Characterization of wheat landraces and commercial cultivars based on morpho-phenological and agronomic traits
    M. A. A. H. Gharib, N. Qabil, A. H. Salem, M. M. A. Ali, H. A. Awaad, E. Mansour
    Cereal Research Communications.2021; 49(1): 149.     CrossRef
  • Sowing Date and Genotype Influence on Yield and Quality of Dual-Purpose Barley in a Salt-Affected Arid Region
    Ehab S. A. Moustafa, El-Sayed E. A. El-Sobky, Hossam I. A. Farag, Mohamed A. T. Yasin, Ahmed Attia, Mohamed O. A. Rady, Mohamed F. Awad, Elsayed Mansour
    Agronomy.2021; 11(4): 717.     CrossRef
  • Field Screening of Wheat Advanced Lines for Salinity Tolerance
    Ehab S. A. Moustafa, Mohamed M. A. Ali, Mohamed M. Kamara, Mohamed F. Awad, Abdallah A. Hassanin, Elsayed Mansour
    Agronomy.2021; 11(2): 281.     CrossRef
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Statistical and Machine Learning-Based FHB Detection in Durum Wheat
Nasrin Azimi, Omid Sofalian, Mahdi Davari, Ali Asghari, Naser Zare
Plant Breed. Biotech. 2020;8(3):265-280.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.265

Pathogens are the major causes of wheat crop yield losses, including the fungus Fusarium graminearum, an agent of Fusarium Head Blight (FHB). A better understanding of the relationship between plant morphological and biochemical traits and resistance to FHB can be effective in implementing a successful breeding program. This study investigated the relationship between FHB resistance as well as the morphological and biochemical traits in 20 durum wheat lines. Both morphological and biochemical traits were investigated using statistical tools. Therefore, analyses of variance, mean, as well as the correlation between the traits were con-sidered. In addition, for the morphological traits, cluster analyses were performed to identify similar genotypes in control and infected conditions. Furthermore, machine learning (ML) classification techniques, including Support Vector Machine (SVM), were proposed to detect the infected plants using morphological traits. The results show a great promise for the application of data-driven ML-based methods in plant breeding and disease detection.

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  • Leveraging the WFD2020 Dataset for Multi-Class Detection of Wheat Fungal Diseases with YOLOv8 and Faster R-CNN
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    Jayme Garcia Arnal Barbedo
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    Guoqing Feng, Ying Gu, Cheng Wang, Yanan Zhou, Shuo Huang, Bin Luo
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    Korean Journal of Breeding Science.2024; 56(3): 205.     CrossRef
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    Korean Journal of Breeding Science.2024; 56(4): 491.     CrossRef
  • Research Advances in Wheat Breeding and Genetics for Fusarium Head Blight Resistance
    Myoung-Hui Lee, Sumin Hong, Kyeong-Min Kim, Sun-Hwa Kwak, Changhyun Choi, Chon-Sik Kang, Chul Soo Park, Youngjun Mo, Kyeong-Hoon Kim
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    Lakshay Goyal, Chandra Mani Sharma, Anupam Singh, Pradeep Kumar Singh
    Informatics in Medicine Unlocked.2021; 25: 100642.     CrossRef
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Radio Sensitivity of Cowpea Plants after Gamma-Ray and Proton-Beam Irradiation
Ryulyi Kang, Eunju Seo, Gyutae Kim, Aron Park, Woon Ji Kim, Si-Yong Kang, Bo-Keun Ha
Plant Breed. Biotech. 2020;8(3):281-292.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.281

Cowpea (Vigna unguiculata (L.) Walp.) is one of the important legume crops in which all stages of plant growth are used in human food and animal feed. In this study, morphological and biochemical changes were investigated in cowpea plants exposed to proton-beams and gamma-rays. ‘Okdang’ cultivar seeds were irradiated with 100, 200, 300, 400, and 500 Gy of gamma-rays and proton-beams. The gamma-ray and proton-beam irradiations significantly delayed emergence period, but had small effects on emer-gence rates. Compared to a control, the proton-beam treatments showed a significant decrease in survival rate above 200 Gy. The gamma-ray treatments significantly reduced survival rate above 300 Gy. The Lethal Dose 50 (LD50) for both irradiations were 200-300 Gy. Plant height and fresh shoot weight tended to decrease with increasing radiation levels. The Reduction Dose 50 (RD50) of plant height was between 100 and 200 Gy for the proton-beam and 200 to 300 Gy for the gamma-ray treatments. The RD50 of fresh shoot weight was expected to be 500 Gy or higher for the proton-beam and gamma-ray treatments. The malonaldehyde (MDA) content in both treatments were slightly decreased at 200 Gy compared to a control, but increased at 300 Gy. Overall, antioxidant enzymes reacted more to proton-beams than to gamma-rays. However, gamma-rays appear to have a greater effect on chlorophyll content than proton-beams. Our research will be valuable as a basic research comparing the mutagenic effects on cowpea induced by two ionizing radiations.

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  • Refining selection strategies for carbon-ion beam mutagenesis in multiple vegetable species
    Yukun Sheng, Lixia Yu, Wenjie Jin, Ruiyuan Liu, Ying Qu, Xiao Liu, Man Wang, Guisen Kang, Chenan Yang, Jing Long, Jianing Ding, Yan Du, Libin Zhou
    Radiation Physics and Chemistry.2026; 249: 114118.     CrossRef
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    Jeong Woo Lee, Jung Min Kim, Dae June Kim, Jin-Mun Yun, Jin-Baek Kim, Min Jeong Hong, Chan Seop Ko, Joon-Woo Ahn, Bo-Keun Ha, Soon-Jae Kwon
    International Journal of Radiation Biology.2026; 102(5): 520.     CrossRef
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    Jiaqi Wang, Wenting Wang, Yan Du, Jian Zou, Weifeng Chen, Dequan Wei
    Food and Bioprocess Technology.2026;[Epub]     CrossRef
  • Estimating Genetic Variability and Heritability of Morpho-Agronomic Traits of M5 Cowpea (Vigna unguiculata (L.) Walp) Mutant Lines
    Kelebonye Ramolekwa, Motlalepula Pholo-Tait, Travis Parker, Goitseone Malambane, Samodimo Ngwako, Lekgari Lekgari
    International Journal of Molecular Sciences.2025; 26(15): 7543.     CrossRef
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    Ghazanfar Abbas, Tanveer Hussain Bokhari, Muhammad Adnan Iqbal, Adnan Majeed, Majid Muneer, Ghulam Hussain, Maham Fatima, Um E. Amara
    Radiation Physics and Chemistry.2025; 229: 112418.     CrossRef
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    Stanislav Geras’kin, Ekaterina Bondarenko, Sofia Bitarishvili
    Planta.2025;[Epub]     CrossRef
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    Dong-Kwan Kim, Kanivalan Iwar, Kingsley Ochar, Sin-Young Park, Eun-Byul Go, Kyung-Dong Lee, Seong-Hoon Kim
    Agronomy.2024; 14(11): 2679.     CrossRef
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  • Gamma-rays induced genome wide stable mutations in cowpea deciphered through whole genome sequencing
    Dhanasekar Punniyamoorthy, Jegadeesan Souframanien
    International Journal of Radiation Biology.2024; 100(7): 1072.     CrossRef
  • Plant acclimation to ionising radiation requires activation of a detoxification pathway against carbonyl‐containing lipid oxidation products
    Brigitte Ksas, Serge Chiarenza, Nicolas Dubourg, Véronique Ménard, Rodophe Gilbin, Michel Havaux
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High-Resolution Bin Maps Provide Insights for QTL Mapping of Yield-Related Traits with Milyang23/Gihobyeo Recombinant Inbred Lines
Ye-Ji Lee, Nam-In Hyung, Tae-Ho Kim
Plant Breed. Biotech. 2020;8(3):293-306.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.293

High-throughput genotyping has substantially advanced the quality and accuracy of single nucleotide polymorphism (SNP) discovery and provided an effective way to interpret phenotypic variations in a mapping population. High-resolution quantitative trait locus (QTL) mapping is important for understanding agricultural traits. However, constructing a high-resolution map without sufficient markers to detect QTLs/genes of agronomically important traits is laborious and time consuming. In this study, 160 recom-binant inbred lines (RILs) derived from a cross between Milyang23 and Gihobyeo were re-sequenced, and their SNPs were used for high-resolution QTL mapping of yield-related traits. A total of 1,850,671 high-quality SNPs from RILs were detected, and 3,563 bins were used as genetic markers to construct a high-resolution genetic map using the sliding window approach. The total genetic distance was 1,278.62 cM. Using the QTL analysis, we identified 35 QTLs controlling six yield traits, namely, culm length, panicle length, panicle number per plant, primary branch number per panicle, grain number per plant, and 100-grain weight. In addition, we detected major QTLs associated with culm length and grain number, and compared their physical distances using a conventional genetic map. These results showed that rapid, high-resolution QTL mapping using high-quality SNPs as bin markers is a powerful tool for fine-mapping and cloning important QTLs/genes.

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