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"Pre-harvest sprouting"

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"Pre-harvest sprouting"

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Influence of Cold and Freezing Storage on Pre-Harvest Sprouting Evaluation in Rice Panicle
Ye-Ji Lee, Su-Kyung Ha, Hyun-Sook Lee, Kyeongmin Kang, Jae-Ryoung Park, Seung Young Lee, Mina Jin, Jung-Pil Suh, Ji-Ung Jeung, Gileung Lee
Plant Breed. Biotech. 2025;13:276-280.
Published online December 17, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.276

Pre-harvest sprouting is a major physiological problem in rice caused by prolonged rainfall and high humidity during the harvest period, and it is one of the most important targets in current rice breeding programs. In this study, the effect of cold and freezing storage on the pre-harvest sprouting rate was investigated using ten rice varieties under four different treatments. The result showed storage treatments of panicle samples used for germinate evaluation had no significant influence on the pre-harvest sprouting rate. These findings may enhance the efficiency of mass screening for pre-harvest sprouting and support the development of tolerant rice varieties.

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Research Articles
Detection of Whole-Genome Resequencing-Based QTLs Associated with Pre-Harvest Sprouting in Rice (Oryza sativa L.)
Seong-Gyu Jang, San Mar Lar, Hongjia Zhang, Ah-Rim Lee, Ja-Hong Lee, Na-Eun Kim, So-Yeon Park, Joohyun Lee, Tae-Ho Ham, Soon-Wook Kwon
Plant Breed. Biotech. 2020;8(4):396-404.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.396

Pre-harvest sprouting (PHS) is one of the important traits that not only cause serious economic issues but also lead to reduction in grain quality and yield in rice (Oryza sativa L.). To analyze the quantitative trait loci (QTLs) for PHS tolerance, we evaluated PHS, seed dormancy (SD), and low-temperature germination (LTG) of 88 F2:3 populations and their parental lines. Genotypic analysis was performed by using 441 single nucleotide polymorphisms (SNPs) detected from re-sequencing data. Seed dormancy (SD) and low-temperature germination (LTG) were identified to exhibit a positive correlation with PHS. Under the field condition, two major QTLs for PHS, qPHS1-1FC and qPHS1-2FC were identified on chromosome 1. Under the growth chamber condition, qPHS1-1GC and qPHS1-2GC had the same regions on chromosome 1. QTLs of SD and LTG (qSD1-1, qSD1-2, qLTG1-1, and qLTG1-2) had the same regions; these results suggested that candidate QTLs demonstrate pleiotropy about PHS, SD, and LTG. The major QTLs detected in this study are hypothesized to provide an important resource for molecular breeding and gain a better understanding of the genetics of traits in rice.

Citations

Citations to this article as recorded by  
  • Integrated physiological, genetic, and environmental insights into pre-harvest sprouting in cereal for climate-resilient breeding
    Trung Quoc Nguyen, Gioi Huy Dong, Nguyen LV, Thao Duc Le, Nguyen Nguyen Chuong, Weiqiang Li, Ha Duc Chu, Cuong Ngoc Duong, Lam-Son Phan Tran
    Seed Biology.2026;[Epub]     CrossRef
  • Mapping QTLs for PHS resistance and development of a deep learning model to measure PHS rate in japonica rice
    Soojin Jun, Mi Hyun Cho, Hyoja Oh, Younguk Kim, Dong Kyung Yoon, Myeongjin Kang, Hwayoung Kim, Seon‐Hwa Bae, Song Lim Kim, Jeongho Baek, HwangWeon Jeong, Jae Il Lyu, Gang‐Seob Lee, Changsoo Kim, Hyeonso Ji
    The Plant Genome.2025;[Epub]     CrossRef
  • Whole-genome meta-analysis coupled with haplotype analysis reveal new genes and functional haplotypes conferring pre-harvest sprouting in rice
    Kelvin Dodzi Aloryi, Nnaemeka Emmanuel Okpala, Mawuli Korsi Amenyogbe, Daniel Bimpong, Benjamin Karikari, Hong Guo, Semiu Folaniyi Bello, Selorm Akaba, Akwasi Yeboah, Abdul Razak Ahmed, Patrick Maada Ngegba, Nabieu Kamara, Juliet Nkiruku Anyanwu, Danielle
    BMC Plant Biology.2025;[Epub]     CrossRef
  • QTL Analysis for Pre-Harvest Sprouting and Low-Temperature Germinability Using Recombinant Inbred Lines Derived from a Cross between ‘Chamdongjin’ and ‘Younghojinmi’
    Hyun-Su Park, Jeonghwan Seo, Heyonso Ji, Gileung Lee, Chang-Min Lee, Jae-Ryoung Park, Songhee Park, Keon-Mi Lee, Mina Jin, O-Young Jeong
    Korean Journal of Breeding Science.2024; 56(2): 79.     CrossRef
  • Discovery of Genomic Regions and Candidate Genes for Awn Length Using QTL-seq in Rice (Oryza sativa L.)
    Dongryung Lee, Hongjia Zhang, Yuting Zeng, Backki Kim, Soon-Wook Kwon
    Plant Breeding and Biotechnology.2023; 11(4): 271.     CrossRef
  • Fine-Mapping Analysis of the Genes Associated with Pre-Harvest Sprouting Tolerance in Rice (Oryza sativa L.)
    Seong-Gyu Jang, Backki Kim, Insoo Choi, Joohyun Lee, Tae-Ho Ham, Soon-Wook Kwon
    Agronomy.2023; 13(3): 818.     CrossRef
  • QTL mapping and improvement of pre-harvest sprouting resistance using japonica weedy rice
    Chang-Min Lee, Hyun-Su Park, Man-Kee Baek, O-Young Jeong, Jeonghwan Seo, Suk-Man Kim
    Frontiers in Plant Science.2023;[Epub]     CrossRef
  • Application of CRISPR/Cas9 Genome Editing System to Reduce the Pre- and Post-Harvest Yield Losses in Cereals
    Thumadath Palayullaparambil Ajeesh Krishna, Theivanayagam Maharajan, Stanislaus Antony Ceasar
    The Open Biotechnology Journal.2022;[Epub]     CrossRef
  • Seed Dormancy and Pre-Harvest Sprouting in Rice—An Updated Overview
    Soo-In Sohn, Subramani Pandian, Thamilarasan Senthil Kumar, Yedomon Ange Bovys Zoclanclounon, Pandiyan Muthuramalingam, Jayabalan Shilpha, Lakkakula Satish, Manikandan Ramesh
    International Journal of Molecular Sciences.2021; 22(21): 11804.     CrossRef
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Mapping of QTL for Pre-Harvest Sprouting Resistance and Seed Dormancy in a Doubled Haploid Population
Kyeong-Hoon Kim, Ji-Ung Jung, Chon-Sik Kang, Sang-Hyun Shin, Jong-Chul Park, Jae-Han Son, Chul Soo Park
Plant Breed. Biotech. 2014;2(3):247-256.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.247

Pre-harvest sprouting (PHS) of wheat reduces grain yield and has deleterious effects on wheat flour quality. PHS resistance is strongly associated with grain color and seed dormancy. Resistance to PHS is a priority of wheat breeding program. We have studied a population of 122 Doubled Haploid (DH) lines from the cross between two cultivars, ‘Keumkang’ and ‘Olgeuru’, in order to detect QTLs correlated with PHS resistance. PHS was evaluated using mist spray in the humid chamber (PHS-MS), and the germination index (GI) was determined for two years. The variety ‘Keumkang’ has white grains and higher percentage of PHS rate (30.2%), while ‘Olgeuru’ has red grains and lower PHS rate (2.8%). There was significant difference in grain color according to the GI. PHS-MS was positively correlated with GI (r = 0.732, P < 0.001). Two molecular markers, Xbarc12 and Xgwm3, were found correlated with PHS resistance and GI. These markers were mapped on chromosomes 3A and 3D with LOD scores of 4.95 and 4.02, respectively. Xbarc12 explained the highest amount of phenotypic variation (R2) which is 11.99% in GI and 27.25% in PHS. Xgwm3 explained 9.10% of phenotypic variation in GI. The respective value of PHS-MS and GI in Korean wheat cultivars ranged from 1.37% to 86.75% and from 0.03 to 0.73. This study provides useful information for marker-assisted wheat breeding for PHS resistance improvement in Korea.

Citations

Citations to this article as recorded by  
  • Development of Molecular Markers for Flower Color Determination Based on Carotenoid Genes Using QTL Analysis in Chrysanthemum
    Ye-Ji Lee, So Youn Won, Jae-A Jung, Jung Sun Kim
    Korean Journal of Breeding Science.2025; 57(2): 91.     CrossRef
  • Current Trends in Wheat Breeding Strategies for Developing Domestic Wheat Cultivars in Korea
    Hajeong Kang, Hyoun-Min Park, San-Gu Lee, Eun-Ha Kim, Muhammad Imran, Hanyoung Choi, Myeong-Ji Kim, Seonwoo Oh
    Korean Journal of Breeding Science.2024; 56(4): 491.     CrossRef
  • Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding
    Mohammad Jafar Tanin, Dinesh Kumar Saini, Karansher Singh Sandhu, Neeraj Pal, Santosh Gudi, Jyoti Chaudhary, Achla Sharma
    Scientific Reports.2022;[Epub]     CrossRef
  • Genome-wide association study of pre-harvest sprouting resistance in Chinese wheat founder parents
    Yu Lin, Shihang Liu, Yaxi Liu, Yujiao Liu, Guoyue Chen, Jie Xu, Mei Deng, Qiantao Jiang, Yuming Wei, Yanli Lu, Youliang Zheng
    Genetics and Molecular Biology.2017; 40(3): 620.     CrossRef
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  • 4 Crossref