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"Principal component analysis"

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"Principal component analysis"

Research Articles
Morphological Variation in Normal Maize Landrace Accessions Collected from South Sudan
Emmanuel Andrea Mathiang, Kyu Jin Sa, Hyeon Park, So Jung Jang, Ju Kyong Lee
Plant Breed. Biotech. 2023;11(1):15-24.   Published online March 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.1.15

Morphological variation was investigated among 31 maize landrace accessions collected from the fields of various farmers in South Sudan by examining 7 quantitative agronomic characteristics. A significant positive correlation was found between days to tasseling (DT) and days to silking (DS), between plant height (PH) and ear height (EH) and stem width (SW), and between EH and SW and leaf length (LL). First and second principal components accounted for 69% of the total variance (40.9% and 28.6%, respectively). PH, EH, SW, LL, and leaf width (LW) were clearly characterized in a positive direction on the first axis. DT and DS were clearly characterized in a positive direction on the second axis. A scatter plot based on phenotypic data revealed the existence of 3 groups based on the most discriminating characteristics: Group I included 5 maize landrace accessions, Group II comprised 14 maize landrace accessions, and Group III included 10 maize landrace accessions. In principal component analysis, generally the investigated genotypes were not clearly grouped into their geographical origins owing to a weak geographic relationship among the accessions. In conclusion, even though the morphological characterization studies were conducted in the South Korean climate, this study revealed significant phenotypic variation among the explored maize landrace accessions collected from South Sudan. Therefore, this information about phenotypic divergence may be very useful for future breeding research programs as well as for genetic improvement of South Sudan maize accessions.

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  • Phylogenetic analysis of Perilla crop (Perilla frutescens L.) based on morphological characteristics and volatile substances
    Jungeun Cho, Hyeon Park, Tae Hyeon Heo, Kyu Jin Sa, Ju Kyong Lee
    Genetic Resources and Crop Evolution.2025; 72(3): 2959.     CrossRef
  • Uncovering microsatellite markers associated with agronomic traits of South Sudan landrace maize
    Emmanuel Andrea Mathiang, Hyeon Park, So Jung Jang, Jungeun Cho, Tae Hyeon Heo, Ju Kyong Lee
    Genes & Genomics.2023; 45(12): 1587.     CrossRef
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Morphological Variation of Accessions of Perilla Crop (Perilla frutescens L.) and Related Weedy Types Collected from South Korea
Ye Ju Ha, Kyu Jin Sa, Ju Kyong Lee
Plant Breed. Biotech. 2021;9(1):77-87.   Published online March 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.1.77

In this study, in order to understand the differentiation process of Perilla crop and related weedy types collected from South Korea, morphological variation between accessions of cultivated var. frutescens and related weedy types of var. frutescens and var. crispa was investigated by principal component analysis (PCA) using morphological characteristics, especially including seed traits such as seed size, seed hardness, seed color and seed germination rate. The first and second principal components accounted for 54.1% and 17.9% of the total variance, respectively. In the PCA analysis, most of the qualitative and quantitative traits contributed significantly to the positive or negative direction on the first axis. Thus, the first axis could be used mainly to distinguish between accessions of cultivated var. frutescens and weedy var. frutescens, and also between accessions of cultivated and weedy types of var. frutescens and weedy var. crispa. However, for several accessions it was not possible to discriminate clearly between accessions of cultivated and weedy types of var. frutescens and also between accessions of the two weedy types of var. frutescens and var. crispa. The results of the PCA analysis are thought to provide useful information for understanding the cultivation process of Perilla crop and the differentiation process of Perilla crop and related weedy types. Also, this study demonstrates the efficacy and utility of PCA analysis using morphological traits, including seed traits such as seed size, seed hardness, seed color and seed germination rate, in the study of morphological variation of Perilla crop and related weedy types.

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  • Determination of Production Year Using Multivariate Statistical Analysis from FTIR Spectrum Data of Perilla Leaves
    Hye-Young Seo, Eun Ji Suh, Eun Bin Choi, Mi Ja Lee, Han Gyeol Lee, Woo Duck Seo, Jung In Kim, Seung-Yeob Song
    Korean Journal of Breeding Science.2024; 56(1): 11.     CrossRef
  • Morphological Variation in Normal Maize Landrace Accessions Collected from South Sudan
    Emmanuel Andrea Mathiang, Kyu Jin Sa, Hyeon Park, So Jung Jang, Ju Kyong Lee
    Plant Breeding and Biotechnology.2023; 11(1): 15.     CrossRef
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Genotypic Variation among Okra (Abelmoschus esculentus (L.) Moench) Germplasms in South India
Kishor Doddanakatte Shivaramegowda, Arya Krishnan, Yogeesh Kebbahalli Jayaramu, Vinod Kumar, Yashoda, Hee-Jong Koh
Plant Breed. Biotech. 2016;4(2):234-241.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.234

Thirty-six okra germplasms were grown and evaluated for yield and yield related traits at the Department of Plant Breeding and Genetics, Vellayani, Trivandrum, Kerala. The germplasms studied possessed sufficient variability for all the traits. High genotypic coefficient of variation (GCV) and phenotypic coefficient of variation (PCV) were noticed for almost all characters and narrow difference between GCV and PCV suggest that environmental influence is minimal for the traits studied. High estimates of heritability coupled with high to moderate genetic advance as percent over mean was recorded for all the characters considered. Yield had positive and significant association with number of fruits per plant, fruit weight, fruit girth and number of primary branches indicating that selection based on these characters may improve yield. Principal component analysis indicated that first three principal components contributed for sixty percent total variation among ten characters describing accessions. The cluster analysis revealed that hybridization of cluster I with cluster IV would be beneficial to develop promising varieties under diverse climatic conditions in India.

Citations

Citations to this article as recorded by  
  • Nutri-biochemical traits’ analysis in biotic stress condition in okra (Abelmoschus esculentus L.)
    Sparsh Nathoo, Ramesh Kumar Yadav, Suman Lata, N D Vinay, Susheel Kumar Sharma, Rakesh Bhardwaj, Prakash Kumar, Nirankar, Rajendra Kumar
    Journal of Plant Biochemistry and Biotechnology.2026; 35(2): 599.     CrossRef
  • Stem anatomical variation and fiber-yielding potential of flax (Linum usitatissimum L.) genotypes
    Most. Morsada Khatun, Md. Riyadh Arefin, A. K. M. Golam Sarwar
    Discover Plants.2026;[Epub]     CrossRef
  • Unlocking genetic diversity in Indian germplasm and breeding lines of Muskdana (Abelmoschus moschatus L.)
    Yash Pandey, Trishna Chaturvedi, Anil Kumar Gupta, Ram Swaroop Verma, Gunjan Tiwari
    Genetic Resources and Crop Evolution.2025; 72(4): 4657.     CrossRef
  • Genetic diversity among Ghanaian Okra (Abelmoschus esculentus L.) Germplasm using Morphological and Molecular markers
    Andrews Appiah, Richard Akromah, Alexander Wireko Kena, Benjamin Annor, Stephen Amoah, Emmanuel Yaw Owusu, Benjamin Karikari
    Ecological Genetics and Genomics.2025; 35: 100347.     CrossRef
  • Genotypic Variation in Root System Architecture in Okra (Abelmoschus esculentus (L.) Moench) for Adaptive Breeding in Soil Resource‐Limited Environments
    Godswill Hygienus, Vincent Agyemang Opoku, Mathias Neumann Andersen, Paul Agu Asare, Michael Osei Adu
    Journal of Agronomy and Crop Science.2025;[Epub]     CrossRef
  • Characterization and Genetic Diversity of Tea (Camellia sinensis (L.) O. Kuntze) Genotypes for Waterlogging Tolerance
    Md. Sabibul Haque, A. K. M. Golam Sarwar, Md. Riyadh Arefin
    Phyton.2024; 93(12): 3411.     CrossRef
  • Isolation of yellow vein mosaic virus (YVMV)‐resistant mutants of okra (Abelmoschus esculentus L.) through applied mutagenesis
    Soham Hazra, Shouvik Gorai, Sourav Roy, Suvojit Bose, Pranab Hazra, Arup Chattopadhyay, Md. Nasim Ali, Sanjay Jambhulkar, Anirban Maji
    Plant Breeding.2024; 143(2): 232.     CrossRef
  • Study on genetic divergence, association between morphological traits and path analysis among different okra (Abelmoschus esculentus L. Moench) genotypes
    S. Vennila, R. Elangaimannan, S. LubnaArshiya, S. Sudhasha
    Vegetos.2024; 39(1): 172.     CrossRef
  • EFFECT OF LEUCAENA LEUCOCEPHALA LEAFY BIOMASS AND NPK FERTILISER ON THE GROWTH AND YIELD OF OKRA, ABELMOSCHUS ESCULENTUS (L.) MOENCH
    Adams Latif MOHAMMED, Kaddiri Nanbaala Kumodu NASIM, Ali MORO
    Journal of Applied Life Sciences and Environment.2023; 55/2022(4(192)): 419.     CrossRef
  • FIELD EVALUATION OF SOME OKRA VARIETIES IN A GUINEA SAVANNAH AGRO-ECOLOGY OF NIGERIA.
    G.G JIBUNG, D.M DAMIYA, D.Y DALOKOM
    Greener Journal of Agricultural Sciences.2023; 13(4): 244.     CrossRef
  • Optimized Box–Behnken Design Combined Response Surface Methodology to Determine Calcium and Iron Contents Using Visible, Atomic Emission and Atomic Absorption Spectrophotometry in Vegetables and Wastewater Samples
    Sirhan Al-Batty, S K Manirul Haque, Nafisur Rahman, Syed Najmul Hejaz Azmi
    Journal of AOAC INTERNATIONAL.2022; 106(1): 99.     CrossRef
  • Correlation and Path Coefficient Analysis of Fruit Yield Attributes in Forty Genotypes of Okra (Abelmoschus esculentus)
    Ronke Justina Komolafe, Omolayo Johnson Ariyo, Christopher Olusanya Alake
    Agricultural Research.2022; 11(1): 15.     CrossRef
  • Variability Assessment of Okra (Abelmoschus esculentus (L.) Moench) Genotypes Based on Their Qualitative Traits
    Nesru Temam, Wassu Mohammed, Shimelis Aklilu, Isabel Marques
    International Journal of Agronomy.2021; 2021: 1.     CrossRef
  • Optimization of gamma radiation dose for induction of mutations in okra
    Soham Hazra, Shouvik Gorai, V Umesh Kumar, Sudip Bhattacharya, Anirban Maji, Sanjay Jambhulkar, Nasim Ali, Arup Chattopadhyay
    International Journal of Vegetable Science.2021; 27(6): 574.     CrossRef
  • SNP marker assay and candidate gene identification for sex expression via genotyping-by-sequencing-based genome-wide associations (GWAS) analyses in Oriental melon (Cucumis melo L.var.makuwa)
    D.S. Kishor, Yoonji Noh, Woon-Ho Song, Gung Pyo Lee, Younghoon Park, Jin-Kee Jung, Eun-Jo Shim, Sung-Chur Sim, Sang-Min Chung
    Scientia Horticulturae.2021; 276: 109711.     CrossRef
  • Genetic Dissection in Morphological Traits of Sesbania Genotypes
    Sontosh C. Chanda, M. Sabibul Haque, A. K. M. Golam Sarwar, M. Nuruzzaman, M. Amir Hossain
    Proceedings of the National Academy of Sciences, India Section B: Biological Sciences.2020; 90(5): 1153.     CrossRef
  • Evaluation of okra (Abelmoschus esculentus L. Moench) genotypes for important quantitative characters
    Abdul Majid Ansari, Ekhlaque Ahmad, Nazrussalam Nazrussalam, D.N. Singh
    International Journal of Agricultural and Applied Sciences.2020; 1(1): 1.     CrossRef
  • Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.)
    D.S. Kishor, Jeonghwan Seo, Joong Hyoun Chin, Hee-Jong Koh
    Frontiers in Genetics.2020;[Epub]     CrossRef
  • Agro morphological Characterization and Evaluation of Okra [Abelmoschus esculentus (L.) Moench] Genotypes for Yield and Other Variability Components at Melkassa, Central Ethiopia
    Nesru Temam, Wassu Mohamed, Shimelis Aklilu
    MOJ Ecology & Environmental Sciences.2020;[Epub]     CrossRef
  • Interactive Effects of Genotype and Nitrogen on the Phenology and Yield Determination of Okra [Abelmoschus esculentus (L.)]
    Saba Fatima, Muhammad Sohail Khan, Muhammad Nadeem, Ilham Khan, Kashif Waseem, Muhammad Nisar, Muhammad Iqbal
    International Journal of Plant Production.2019; 13(1): 73.     CrossRef
  • Genetic relationships among okra (Abelmoschus esculentus (L.) Moench) cultivars in Nigeria
    Bashir O. Bello, D. AMINU
    Acta agriculturae Slovenica.2017;[Epub]     CrossRef
  • Varietal performance and correlation of okra pod yield and yield components
    Dattijo Aminu, Omolaran Bashir Bello, Babagana Abba Gambo, Alafe Hakeem Azeez, Oludare James Agbolade, Ali Iliyasu, Usman Abdulrahman Abdulhamid
    Acta Universitatis Sapientiae, Agriculture and Environment.2016; 8(1): 112.     CrossRef
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