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Research Article

T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations

Plant Breeding and Biotechnology 2014;2(3):268-275.
Published online: September 30, 2014

1Biosafety Division, National Academy of Agricultural Science, RDA, Jeonju-si, Jeollabuk-do 560-500, Republic of Korea

2School of Applied Biosciences, College of Agriculture & Life Science, Kyungpook National University, Daegu 702-701, Republic of Korea

3National Institute of Crop Science, Rural Development Administration, Iksan, Chonbuk, Korea

*Corresponding author: Soon-Jong Kweon, Kwonsj@korea.kr, Tel: +82-63-238-4715, Fax: +82-63-238-4704
• Received: September 2, 2014   • Revised: September 19, 2014   • Accepted: September 23, 2014

Copyright © 2014 The Korean Society of Breeding Science

This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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  • Analysis of T-DNA integration events in transgenic rice
    Wankui Gong, Yun Zhou, Rui Wang, Xiaoli Wei, Lei Zhang, Yan Dai, Zhen Zhu
    Journal of Plant Physiology.2021; 266: 153527.     CrossRef
  • Genetic Stability, Inheritance Patterns and Expression Stability in Biotech Crops
    Laura Privalle, Patricia Back, Apurv Bhargava, Zach Bishop, Krystal Cisneros, Isabelle Coats, Ine Criel, Lien Dhondt, Travis Draughn, Barb Fowler, Brad Franklin, Durba Ghoshal, Jim Lor, Jennifer Massengil, Sofie Moens, Tyson Mooney, Dannyel Nelson, Karoli
    OBM Genetics.2020; 04(04): 1.     CrossRef

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T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations
Plant Breed. Biotech.. 2014;2(3):268-275.   Published online September 30, 2014
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Plant Breed. Biotech.. 2014;2(3):268-275.   Published online September 30, 2014
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T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations
Image Image Image
Fig. 1 Confirmation of T-DNA integrity structure and generational stability of Iksan526. A. The basic molecular information of inserted T-DNA and primer design for LA-PCR; B. T-DNA flanking sequence analysis through three generations by LA-PCR.
Fig. 2 Confirmation on copy numbers of six functional elements for Iksan526 using Southern blot hybridization. A. The restriction enzyme sites of inserted T-DNA and their expected band sizes; B. Copy numbers of six functional elements through three generations. * M: Generuler 1 kb plus ladder; NC: Dongjin (negative control); T6~8: generation of Iksan526; PC: Positive control (psb2220–5.04kb)
Fig. 3 Inserted resveratrol synthase gene and bar gene expression of Iksan526 by RT-PCR. A. Gene expression in different growing stage; B. Gene expression in different tissues.
T-DNA Inheritance Stability of Resveratrol Rice Iksan526 over Multi-generations

The primer sequence information of LA-PCR.

Primers Primer sequence Primer location
Primers of flanking regions from rice genomes

526GL-F02 CAATTCGGTCTCATTAGCCTACCTCA 210bp from 1st T-DNA on chr. 12
526GL-C GTGCTTGTTGTCTTCTCTTACG 200bp from 1st T-DNA on chr. 12
526GR-B GATATAGACCTAGCACAGAAAGG 220bp from 2nd T-DNA on chr. 12
526GR-rv04 CAGAAAGGACACATGTCCCGTTGAGAGA 210bp from 2nd T-DNA on chr. 12

Common primer from plasmid vector (pSB2220)

Pubi-rvs13 CCCCCCTCTCTACCTTCTCTAGATC 4302bp from left border
Pubi-rev30 TTAGATCCGTGCTGCTAGCGTTC 4212bp from left border

The primer sequence information of specific probes from six functional elements and inner control actin for RT-PCR.

Functional elements Primer names Primer sequences Expected size Specific enzymes
35S terminater 35s-ter-f ATTCGGGGGATCTGGATTTTAGTACT 187bp EcoRI
35s-ter-r CGAGTTTCTCCATAATAATGTGTGAG
35S promoter 35s-pro-f GGTAGACTCGAGAGAGATAGATTTG 152bp PvuI
35s-pro-r TGATGTGATATCTCCACTGACGTA
Nos-terminater Nos-ter-f GCGATAATTTATCCTAGTTTGCGCGCTA 244bp ClaI
Nos-ter-r CGGAGCTCGAATTTCCCCGATCGTTC
Ubiquitin promoter ubi-pro-f GTCCTGTTGTCAAAATACTCAATTGTC 276bp BamHI
ubi-pro-r AGTGCCAAGCTTGCATGCCTGCAGTGC
Bar bar-for GAAGTCCAGCTGCCAGAAAC 400bp EcoRV
bar-rev AAGCACGGTCAACTTCCGTA
Resveratrol synthase Rs-for GCATTGTTTGCGGATGGAGCTG 500bp SacI
Rs-rev TTATATGGCCACACTGCG

Actin fw CTGCTATGTACGTCGCCATC 440bp -
rv GTCTCATGGATACCCGCAG

The primer sets for confirmation on absence of T-DNA vector backbone sequence in transgenic rice line Iksan526.

Backbone Primer name Primer sequence Expected size
Pair1 rsbcbn-1-fw GATACAGGCAGCCCATCAGTC 753bp
rsbcbn-1-rv TTTCAAGGGCTTTGTTCATCTTCA
pair2 rsbcbn-2-fw CACTTTGAACGGCATGATGG 797bp
rsbcbn-2-rv CAGTATTTGTATCTGCGCTCTG
pair3 rsbcbn-3-fw GCGGTGGTTTGTTTGCCGGATCAAGAGC 809bp
rsbcbn-3-rv GATTGTACTGAGAGTGCACCATA
pair4 rsbcbn-4-fw GCGAGTCAGTGAGCGAGGAAGC 944bp
rsbcbn-4-rv GTGGCAGCGCCGGAGAGTTC
pair5 rsbcbn-5-fw CCGCCTCCTCCTTCAAATCGTA 794bp
rsbcbn-5-rv CGCCCAAGGGCGACGAGCAA
pair6 rsbcbn-6-fw CATGATGCTGCGACTATCG 781bp
rsbcbn-6-rv AACCGTTCTTGAATCAGAACC
pair7 rsbcbn-7-fw TAACTCAAATGAGTTTTGATTTG 769bp
rsbcbn-7-rv GCCAAGCTGGCGGCCTGG
pair8 rsbcbn-8-fw CATCACCTTTTTAGACGG 771bp
rsbcbn-8-rv GCACCAGGCGCGACCGC
pair9 rsbcbn-9-fw CACTGTCACAACGTCGCCAG 562bp
rsbcbn-9-rv GGTTTATCCGTTCGTCCA

Comparison and t-test analysis of agronomic and yield traits over three years (generations) of resveratrol transgenic rice Iksan526 and its donor variety Dongjin.

Variety Years Culm length Panicle length Panicle number Weight/plant (g) 100-grain weight (g)
Iksan526 2011 94.15±4.69 20.74±1.85 11.17±2.13 30.63±7.16 2.73±0.17
Dongjin 96.60±4.27 20.30±1.57 13.10±1.85 34.28±7.93 2.61±0.10
t value 0.30 0.24 0.85 0.14 0.77

Iksan526 2012 83.24±3.89 22.02±1.71 8.84±2.33 26.31±8.98 2.99±0.07
Dongjin 86.32±2.38 21.26±1.10 8.89±2.40 27.53±8.26 2.83±0.09
t value 0.83 0.47 0.02 0.14 2.15* z)

Iksan526 2013 81.66±2.64 20.59±1.28 7.80±2.15 15.36±4.81 2.79±0.06
Dongjin 83.89±2.03 21.30±0.95 7.80±2.12 18.85±5.37 2.74±0.07
t value 0.92 0.60 0.00 0.74 0.73

Iksan526 3Y 85.60±6.30 21.37±1.78 8.92±2.53 23.10±9.55 2.86±0.15
Dongjin 87.78±5.09 21.08±1.26 9.11±2.75 24.57±8.27 2.76±0.11
t value 0.36 0.17 0.07 0.16 0.71
Variety Years Unfilled grain number Filled grain number Seed set (%) Grain number/panicle Resveratrol (+ Piceid) (ug/g)
Iksan526 2011 102.35±48.88 1121.04±248.18 91.52±3.84 101.28±17.52 4.34±0.11
Dongjin 111.10±45.82 1313.96±311.99 92.12±3.18 100.69±19.07 -
t value 0.01 0.01 0.18 0.00 -

Iksan526 2012 180.46±81.28 879.91±298.24 83.03±4.67 119.16±17.95 4.27±0.19
Dongjin 89.42±33.71 974.79±298.06 91.46±2.80 119.71±13.49 -
t value 1.20 0.32 1.90 0.03 -

Iksan526 2013 309.57±94.91 552.23±176.02 63.75±5.37 70.64±10.37 4.48±0.03
Dongjin 145.30±71.19 687.68±199.60 82.67±6.20 87.88±7.23 -
t value 1.88 0.78 3.58** y) 1.82 -

Iksan526 3Y 212.72±114.19 806.77±328.59 59.14±31.03 97.43±26.64 4.36±0.11
Dongjin 116.98±58.63 892.45±304.80 72.31±33.22 101.94±18.97 -
t value 0.90 0.26 0.42 0.18 -

* z)indicates a significance at 0.05 level.

** y)indicates a significance at 0.01 level.

Phenotypic and genotypic separation ratio at F2 and F3 populations from a cross Dongjin/Iksan526.

Population Phenotype/genotype Treatment Expected separation ratio Observed separation ratio Possibility
Dongjin/Iksan526 F2 population Phenotypic separation Basta 3 : 1 Resistant 321 Susceptible 129 >0.90
Genotypic separation PCR 1 : 2 Homologous 92 Heterozygous 208 z) >0.90
Dongjin/Iksan526 F3 population Phenotypic separation Basta 3 : 1 Resistant 7100 Susceptible 2386 >0.90
Genotypic separation PCR 1 : 2 Homologous 120 Heterozygous 232 >0.90

z)the survival heterozygous lines of F2 population were used for genetic analysis of F3 population.

Supplemental Table 1 The primer sequence information of LA-PCR.
Supplemental Table 2 The primer sequence information of specific probes from six functional elements and inner control actin for RT-PCR.
Supplemental Table 3 The primer sets for confirmation on absence of T-DNA vector backbone sequence in transgenic rice line Iksan526.
Table 1 Comparison and t-test analysis of agronomic and yield traits over three years (generations) of resveratrol transgenic rice Iksan526 and its donor variety Dongjin.

indicates a significance at 0.05 level.

indicates a significance at 0.01 level.

Table 2 Phenotypic and genotypic separation ratio at F2 and F3 populations from a cross Dongjin/Iksan526.

the survival heterozygous lines of F2 population were used for genetic analysis of F3 population.