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"Interaction"

Research Articles

Interaction of Rice Quantitative Trait Locus gw9.1 with Three Grain Shape Genes
Yun-Joo Kang, Yun-A Jeon, Ju-Won Kang, Hyun-Sook Lee, Sang-Nag Ahn
Plant Breed. Biotech. 2016;4(1):51-60.   Published online February 28, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.1.51

Grain size is one of the most important factors determining grain yield in rice breeding. In previous studies, we constructed high-density maps for two quantitative trait loci (QTL) for grain weight, tgw2 and gw9.1, using progeny derived from crosses between the japonica cultivar Hwaseong and Oryza grandiglumis, and Hwaseong and O. rufipogon (IRGC 105491), respectively. The wild alleles contributed an increase in grain weight at these two loci. We developed an F2 population (146 plants) by crossing two near isogenic lines (NILs) harboring tgw2 and gw9.1 to know how they interact in the near isogenic background. Simple sequence repeat markers tightly linked to two QTL were used to check the genotype of the F2 population. Based on the genotype at two loci, 146 F2 plants were classified into 9 groups with a combination of three genotypes at each two loci. Two gene interaction was not significant (P=0.99) in the F2. Homozygous plants with wild alleles at two loci showed significantly higher 1,000 grain weight than plants with a single QTL in the F2 and F3. These results indicate that two QTLs act additively in distinct or complementary pathways in controlling GW. Gene expression analysis was also performed to know the relationship of the gw9.1 QTL with three major grain size genes with Hwaseong and two NILs plants at the transcription level. The results from this study provide insight into grain size regulation in rice and are likely to be useful for marker aided selection for grain size.

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  • Analysis of Yield- and Quality-Related Traits of Risotto Rice Varieties in a Korean Environment
    Songhee Park, Jeonghwan Seo, Chang-Min Lee, Jae-Ryoung Park, Keonmi Lee, O-Young Jeong, Youngjun Mo, Hyun-Su Park
    Korean Journal of Breeding Science.2025; 57(1): 13.     CrossRef
  • QTL Analysis Related to Grain Size Using the Population Derived from a Cross Between Hopum and Basmati 370
    Da-Eun Im, Seong-Gyu Jang, Backki Kim, Jeonghwan Seo, D. S. Kishor, Hee-Jong Koh, Soon-Wook Kwon
    Korean Journal of Breeding Science.2023; 55(2): 118.     CrossRef
  • QTL-by-QTL, QTL-by-environment, and QTL-by-QTL-by-environment interactions of loci controlling grain length in rice
    Tsuneo Kato, Akira Horibata
    Euphytica.2022;[Epub]     CrossRef
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Analysis of QTL Interaction for Grain Weight using Near Isogenic Lines in Rice
Hae-hwang Kim, Dong-min Kim, Ju-won Kang, Hyun-Sook Lee, Yun-ju Kang, Sang-nag Ahn
Plant Breed. Biotech. 2015;3(1):30-38.   Published online March 31, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.1.030

Grain weight (GW) is one of the most important targets for grain yield in rice breeding. In previous studies, two quantitative trait loci (QTLs) for grain weight, tgw2 and gw8.1, were identified using progeny derived from crosses between the japonica cultivar Hwaseong and Oryza grandiglumis, and between Hwaseong and O. rufipogon (IRGC 105491), respectively. The wild alleles increased GW at two loci. An F2 population (186 plants) was developed by crossing two near isogenic lines (NILs) harboring tgw2 and gw8.1 to test their interaction. Simple sequence repeat (SSR) markers tightly linked to the two QTLs were used to check the genotype of the F2 population. Based on the genotype at the two loci, tgw2 and gw8.1, the F2 plants were classified into 9 groups with a combination of three genotypes at each of the two loci. Two-way ANOVA revealed no interaction between the 2 QTLs in the F2 population. The 1,000 grain weight (TGW) of homozygous plants with wild alleles at the two loci was significantly higher than that of plants with a single QTL in the F2 and F3 lines. These results indicate that two QTLs act additively, in distinct or complementary pathways, to control grain weight. Based on these results, it is desirable to pyramid the two QTLs into a single line, since the double-QTL line displayed further increase of TGW in the Hwaseong background.

Citations

Citations to this article as recorded by  
  • QTL Analysis Related to Grain Size Using the Population Derived from a Cross Between Hopum and Basmati 370
    Da-Eun Im, Seong-Gyu Jang, Backki Kim, Jeonghwan Seo, D. S. Kishor, Hee-Jong Koh, Soon-Wook Kwon
    Korean Journal of Breeding Science.2023; 55(2): 118.     CrossRef
  • QTL-by-QTL, QTL-by-environment, and QTL-by-QTL-by-environment interactions of loci controlling grain length in rice
    Tsuneo Kato, Akira Horibata
    Euphytica.2022;[Epub]     CrossRef
  • Fine mapping and candidate gene analysis of the quantitative trait locus gw8.1 associated with grain length in rice
    Yun-Joo Kang, Kyu-Chan Shim, Hyun-Sook Lee, Yun-A Jeon, Sun-Ha Kim, Ju-Won Kang, Yeo-Tae Yun, In-Kyu Park, Sang-Nag Ahn
    Genes & Genomics.2018; 40(4): 389.     CrossRef
  • Estimation of additive and epistatic gene effects of doubled haploid lines of winter oilseed rape (Brassica napus L.)
    Jan Bocianowski, Kamila Nowosad, Agnieszka Dobrzycka, Joanna Wolko
    Euphytica.2017;[Epub]     CrossRef
  • Path analysis and estimation of additive and epistatic gene effects of barley SSD lines
    Jan Bocianowski, Katarzyna Górczak, Kamila Nowosad, Wojciech Rybiński, Dariusz Piesik
    Journal of Integrative Agriculture.2016; 15(9): 1983.     CrossRef
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Phenotypic Stability Analysis of Yield Components in Cashew (Anacardium occidentale L.) Using Additive Main Effect and Multiplicative Interaction (AMMI) and GGE Biplot Analyses
Olawale M. Aliyu, Oluwatosin O. Adeigbe, Oluwafemi O. Lawal
Plant Breed. Biotech. 2014;2(4):354-369.   Published online December 31, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.4.354

Perennial poor fruit-set and variability in tree yield are among major problems of cashew nut production. Thus, development of improved stable genotypes would be a sustainable strategy to address this perpetual problem in order to boost income and livelihood of many smallholder farmers of this important commodity crop. Here, we have applied additive main effect and multiplicative interaction (AMMI) and genotype, genotype by environment (GGE) biplot analysis to a 3-year multi-locational trial data on nine yield component characters of cashew to evaluate phenotypic stability across diverse environments. Variance analysis showed significant variability in the cashew genotypes and strong influence of genotype by environment (GxE) on tree yield as none of the genotypes was stable for any of the yield components across locations. GxE data showed that a substantial portion of the variation was explained by the genotype (highly heritable), accounting for between 10% and 87% of the variation, while the environment accounted for between 0.7% and 37%. Data showed significant higher values of interaction (GxE) than the respective values for environment, and were mostly captured and could be explained by the first principal component axis (IPCA 1) for all the yield component characters. There was an inverse relationship between stability and yield as the best three yielding genotypes (KT_26, IW_222 and IW_31) were found to be the most unstable. Among the yield component tested, hermaphrodite flowers per panicle, nuts per panicle, nuts per tree, nut weight, and tree fruiting efficiency were identified to be critical components for nut yield. Although there was wide variation between the three environments evaluated, the data effectively identified two mega-environments (ME), and two superior genotypes (IW_222 and KT_26) suitable for these two mega-environments. The GxE complex exposes the short-comings of broad recommendations of common agronomic-husbandry technologies across diverse cashew ecologies as each mega-environment would require specific adaptable technologies for optimal plant output. Above all, the data presented here underscore the importance of multi-locational evaluation of genotypes for varietal development in cashew.

Citations

Citations to this article as recorded by  
  • Growth and yield response of cashew (Anacardium occidentale L.) clones to spacing in the Guinea Savanna zone of Ghana
    Sampson Konlan, Michael Teye Barnor, Alfred Arthur, Jerome Agbesi Dogbatse, Jacob Danso, Godfred Kwaku Awudzi, Moses Kwame Aidoo, Frank Owusu‐Ansah
    Agrosystems, Geosciences & Environment.2026;[Epub]     CrossRef
  • Identification of superior dwarf cashew clones by graphic analysis in Pacajus, Ceará, Brazil
    Gilberto Ken Yokomizo, Dheyne Silva Melo, Kuang Hongyu, Luiz Augusto Lopes Serrano, Francisco da Chagas Vidal-Neto
    Acta Biológica Colombiana.2026; 31(1): 90.     CrossRef
  • Efeitos dos meses no comportamento de progênies de açaizeiro para caracteres de cacho de frutos
    Gilberto Ken Iti Yokomizo, Kuang Hongyu, João Tomé de Farias Neto, Francisco de Oliveira Cruz Júnior
    PesquisAgro.2025; 9(1): 15.     CrossRef
  • Analysis of stability for nut yield and ancillary traits in cashew (Anacardium occidentale L.)
    E. Eradasappa, G. S. Mohana, M. Poduval, K. Sethi, M. S. Aneesa Rani, I. K. Lourdusamy, S. Velmurugan, M. Manjusha, T. N. Raviprasad, C. Anilkumar
    Scientific Reports.2024;[Epub]     CrossRef
  • Assessment of adaptability of cashew varieties to changing environmental conditions of Odisha
    Kabita Sethi, Manasi Dash, P.K. Panda, Mohana G.S., J. Dinakara Adiga
    Scientia Horticulturae.2024; 324: 112577.     CrossRef
  • Genotype × environment interaction for establishment and precocity traits among elite cocoa (Theobroma cacao L.) hybrids in Ghana
    Atta Ofori, Francis Kwame Padi, Abraham Akpertey, Kwabena Asare Bediako, Alfred Arthur, Paul Kwasi Krah Adu-Gyamfi, Daniel Nyadanu, Ebenezer Obeng-Bio, Esther Anokye
    Euphytica.2023;[Epub]     CrossRef
  • Estabilidade e adaptabilidade de clones de cajueiro para caracteres fenológicos
    Gilberto Ken Iti Yokomizo, Francisco das Chagas Vidal Neto, Kuang Hongyu, Dheyne Silva Melo, Luiz Augusto Lopes Serrano
    Agrarian.2021; 14(54): 412.     CrossRef
  • Broadening the Gene Pool of Cashew (Anacardium occidentale) for Survival and Precocity
    Paul K. K. Adu-Gyamfi, Michael Barnor, Abraham Akpertey, Abu Mustapha Dadzie, Edem Anyomi, Seth Osei-Akoto, Francis Padi
    Agricultural Research.2021; 10(4): 613.     CrossRef
  • Genetic variability and trait association studies in cashew (Anacardium occidentale L.)
    Paul K.K. Adu-Gyamfi, Mustapha Abu Dadzie, Michael Barnor, Abraham Akpertey, Alfred Arthur, Seth Osei-Akoto, Atta Ofori, Francis Padi
    Scientia Horticulturae.2019; 255: 108.     CrossRef
  • Farmers’ Perceptions on the Agricultural Use of Human Urine in the Central Amazon
    Patrícia Müller, João Paulo Borges Pedro, Carlos Henrique De Castro Freitas
    Mundo Amazónico.2017;[Epub]     CrossRef
  • Análise GGE biplot na avaliação de características de cachos em Açaizeiros da região Amazônica
    Gilberto Ken Iti Yokomizo, João Tomé de Farias Neto, Kuang Hongyu, Maria Do Socorro Padilha de Oliveira
    Mundo Amazónico.2017;[Epub]     CrossRef
  • Genomic selection for wheat traits and trait stability
    Mao Huang, Antonio Cabrera, Amber Hoffstetter, Carl Griffey, David Van Sanford, José Costa, Anne McKendry, Shiaoman Chao, Clay Sneller
    Theoretical and Applied Genetics.2016; 129(9): 1697.     CrossRef
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  • 12 Crossref

Review Article

Key Roles of Cysteine Protease in Different Plant Pathosystem
Marjohn Niño, Joonki Kim, Hye Jung Lee, Sailila E. Abdula, Ill Sup Nou, Yong-Gu Cho
Plant Breed. Biotech. 2014;2(2):97-109.   Published online June 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.2.097

Cysteine protease is one of the well-studied proteolytic enzymes in plants. This class of protease has been implicated in various physiological aspects of developmental stages in plants including seed germination, senescence, and disease immunity. A handful of studies assign plants cysteine protease in different molecular battlefield under a few selected pathosystems, and initially extricate complex molecular mechanism of resistance. Interestingly, the same type of proteases released by pathogens have been demonstrated to play a crucial role in establishing disease infection in plants. Most of which target resistance proteins resulting either in an access to the hosts biochemical loot or cascades of signals for defense. As means of enabling and disabling host immunity, this class of protease is subject to diversifying selection, which is an intriguing outcome under natural host pathosystem. This paper summarizes the key roles of cysteine proteases in a few selected plant pathosystems.

Citations

Citations to this article as recorded by  
  • Transcriptome analysis of cacao reveals differentially expressed genes associated with resistance to Phytophthora palmivora
    Nur Kholilatul Izzah, Murukarthick Jayakodi, Sang-Choon Lee, Khaerati, Cici Tresniawati, Widi Amaria, Faizal Maulana, Jee Young Park, Tae-Jin Yang
    3 Biotech.2026;[Epub]     CrossRef
  • Phapa-4574965: A multifunctional effector of Phakopsora pachyrhizi targeting multiple host metabolic components
    Alice Satiko Utiyama, Thays Vieira Bueno, Valeria Yukari Abe, Adriana Brombini dos Santos, Luana M. Darben, Aluízio Borém de Oliveira, Ricardo V. Abdelnoor, Steven A. Whitham, Luciano G. Fietto, Francismar C. Marcelino-Guimarães
    Physiological and Molecular Plant Pathology.2026; 144: 103271.     CrossRef
  • Identification of a Papain-like Cysteine Protease Functioning as an Avirulence Factor in Striga–Cowpea Interactions
    Danhua Zhang, Michael P. Timko
    Plants.2025; 14(10): 1427.     CrossRef
  • Exploring Bioactive Metabolites From Fusarium falciforme and Aspergillus terreus Isolated From Protease‐Rich Fruits: Antifungal, Antitrypanosomal, and Enzymatic Inhibitory Activities
    Gabriela de Oliveira Almeida, Vitor de Souza Mazucato, Ludmilla Tonani, Marcia Regina von Zeska Kress, Gisele Barbosa, Renata Krogh, Adriano Defini Andricopulo, Leonardo Luiz Gomes Ferreira, Paulo Cezar Vieira
    Chemistry & Biodiversity.2025;[Epub]     CrossRef
  • Comprehensive Analysis of C48 Domain Containing Cysteine Protease Enzymes Revealed Their Role During Abiotic Stress and Reproductive Development in Rice
    Rajeev Ranjan, Reema Mishra
    Journal of Plant Growth Regulation.2024; 43(7): 2314.     CrossRef
  • New Genomic Regions Identified for Resistance to Spot Blotch and Terminal Heat Stress in an Interspecific Population of Triticum aestivum and T. spelta
    Sudhir Navathe, Ajeet Kumar Pandey, Sandeep Sharma, Ramesh Chand, Vinod Kumar Mishra, Dinesh Kumar, Sarika Jaiswal, Mir Asif Iquebal, Velu Govindan, Arun Kumar Joshi, Pawan Kumar Singh
    Plants.2022; 11(21): 2987.     CrossRef
  • Efficacy of seed defense proteins in biofortified pearl millet lines against blast and downy mildew
    Marri Swathi, Nimmala Naresh, Tirupaati Swaroopa Rani, Mahalingam Govindaraj, Rajan Sharma
    Acta Physiologiae Plantarum.2021;[Epub]     CrossRef
  • Genome-wide transcriptional response of papain-like cysteine protease-mediated resistance against Xanthomonas oryzae pv. oryzae in rice
    Marjohn C. Niño, Kwon Kyoo Kang, Yong-Gu Cho
    Plant Cell Reports.2020; 39(4): 457.     CrossRef
  • Genome-wide identification and molecular characterization of cysteine protease genes in rice
    Marjohn C. Niño, Me-Sun Kim, Kwon Kyoo Kang, Yong-Gu Cho
    Plant Biotechnology Reports.2020; 14(1): 69.     CrossRef
  • Two Phytophthora parasitica cysteine protease genes, PpCys44 and PpCys45, trigger cell death in various Nicotiana spp. and act as virulence factors
    Qiang Zhang, Weiwei Li, Jiapeng Yang, Junjie Xu, Yuling Meng, Weixing Shan
    Molecular Plant Pathology.2020; 21(4): 541.     CrossRef
  • Involvement of a vascular hypersensitive response in quantitative resistance to Ralstonia solanacearum on tomato rootstock cultivar LS‐89
    K. Nakaho, S. Seo, K. Ookawa, Y. Inoue, S. Ando, Y. Kanayama, S. Miyashita, H. Takahashi
    Plant Pathology.2017; 66(1): 150.     CrossRef
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Research Article
Variety x Location Interaction on Oil, Fatty acids, Tocopherols and Phytosterols in Korean Rapeseed (Brassica napus L.)
Xiangmin Piao, Seong Yel Choi, Young Ho Kim, Yong Hwa Lee, Kwang Soo Kim, Young Seok Jang, Yoon-Sup So, Hong Sig Kim
Plant Breed. Biotech. 2013;1(1):91-101.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.091

Rapeseeds have many health benefits because its oil is rich in polyunsaturated and monounsaturated fatty acids, tocopherols and phytosterols. The
objective
of this research was to examine a possible genetic variation of oil, fatty acids, tocopherols and phytosterols in eight rapeseed varieties and the effect of locations on expression of those chemical compounds. In this study, effects of variety x location interaction for palmitic, stearic, oleic, linoleic, linolenic, eicogenic and erucic contents were found to be significant while that of oil content was not. For oil content, variation between the two locations was much higher than all other factors. Variation among varieties was the major source of variation in most fatty acids. Variation between two locations was much less for tocopherols and phytosterols than that for oil and fatty acids. Instead, variation in residual effect was much higher in tocopherols and phytosterols demanding more number of replication to achieve same level of statistical precision as oil and fatty acids. Correlation analyses confirmed that some of the chemical compounds can be a target for indirect selection.

Citations

Citations to this article as recorded by  
  • Screening of Pod Shatter Resistance and Analysis of Correlations with Agronomic Traits in Rapeseed (Brassica napus L.)
    Jaehee Jeong, Da-Hee An, Hyun-Min Cho, Young-Lok Cha, Ji-Bong Choi, Dong-Sung Kim, Soo-Yeon Kim
    Korean Journal of Breeding Science.2025; 57(2): 55.     CrossRef
  • Single Nucleotide Polymorphism (SNP) Discovery and Association Study of Flowering Times, Crude Fat and Fatty Acid Composition in Rapeseed (Brassica napus L.) Mutant Lines Using Genotyping-by-Sequencing (GBS)
    Jaihyunk Ryu, Jae Il Lyu, Dong-Gun Kim, Kwang Min Koo, Baul Yang, Yeong Deuk Jo, Sang Hoon Kim, Soon-Jae Kwon, Bo-Keun Ha, Si-Yong Kang, Jin-Baek Kim, Joon-Woo Ahn
    Agronomy.2021; 11(3): 508.     CrossRef
  • Changes in approximate composition, antioxidant activity and melatonin content of rapeseed during germination
    Seok Joong Kim
    Korean Journal of Food Preservation.2016; 23(6): 839.     CrossRef
  • Lipid Composition of Korean Rapeseed (Brassica napus L.) Cultivar and Antioxidant Capacity of Phenolic Extract
    A-Young Lee, Soon-Taek Hong, Young-Seok Jang, Jeung-Hee Lee
    Journal of the Korean Society of Food Science and Nutrition.2014; 43(12): 1817.     CrossRef
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  • 4 Crossref