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Rapid Communication

Influence of Cold and Freezing Storage on Pre-Harvest Sprouting Evaluation in Rice Panicle
Ye-Ji Lee, Su-Kyung Ha, Hyun-Sook Lee, Kyeongmin Kang, Jae-Ryoung Park, Seung Young Lee, Mina Jin, Jung-Pil Suh, Ji-Ung Jeung, Gileung Lee
Plant Breed. Biotech. 2025;13:276-280.
Published online December 17, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.276

Pre-harvest sprouting is a major physiological problem in rice caused by prolonged rainfall and high humidity during the harvest period, and it is one of the most important targets in current rice breeding programs. In this study, the effect of cold and freezing storage on the pre-harvest sprouting rate was investigated using ten rice varieties under four different treatments. The result showed storage treatments of panicle samples used for germinate evaluation had no significant influence on the pre-harvest sprouting rate. These findings may enhance the efficiency of mass screening for pre-harvest sprouting and support the development of tolerant rice varieties.

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Research Articles

Identification of QTLs for Cold Tolerance at Seedling Stage Using a Population Derived from an Inter-specific Cross in Rice
Kyu-Chan Shim, Yeo-Tae Yun, Ju-Won Kang, Sang-Nag Ahn
Plant Breed. Biotech. 2022;10(4):282-289.   Published online December 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.4.282

Cold stress is one of the serious abiotic stresses for stable rice production especially in high-latitude temperate region and high-altitude tropical area. Improving cold tolerance at seedling stage led stable seedling growth with yield stability. In this study, QTLs for cold tolerance at seedling stage were identified using the 96 introgression lines (ILs) derived from an inter-specific cross between Hwaseong (Oryza sativa) and Oryza rufipogon. Three QTLs were detected and the O. rufipogon alleles at two QTL (qCTS1 and qCTS12) improved cold tolerance in the Hwaseong genetic background whereas the O. rufipogon allele at qCTS10 on chromosome 10 decreased cold tolerance. Among these three QTLs, a major QTL qCTS12 explained 27.5% of phenotypic variation. Fine-mapping indicated that qCTS12 was different from those QTL reported in previous studies based on the map location suggesting that qCTS12 might be a new allele and is not associated with deleterious genes such fertility reduction. Among the 96 introgression lines, two lines, CR60 and CR61 were selected based on enhanced cold tolerance at seedling stage. qCTS12, therefore, provides a valuable allele for breeding rice with improved cold tolerance.

Citations

Citations to this article as recorded by  
  • Stage-specific screening reveals differential resilience response to cold stress in rice
    Fahamida Akter, Partha S. Biswas, Abul Kalam Mohammad Aminul Islam, Mohammad Sharif Raihan, Md. Mizanur Rahman, Khandakar Md. Iftekharuddaula, Mohammad Rafiqul Islam, John Damien Platten, Md Ashrafuzzaman
    PLOS One.2026; 21(4): e0338290.     CrossRef
  • Genome-wide Association Study for Cold Tolerance at Seedling Stage Using a Core Collection of Korean Rice
    Sa-Eun Park, Ngoc Ha Luong, Sang-Nag Ahn, Kyu-Chan Shim
    Journal of Agriculture & Life Science.2025; 59(2): 13.     CrossRef
  • Identification of QTLs Related to Plant Growth at Low Temperatures in the Seedling Stage of Tongil Type Rice after Transplanting
    Seong-Gyu Jang, Ji-Yoon Lee, Ju-Won Kang, Youngho Kwon, So-Myeong Lee, Sais-Beul Lee, Jun-Hyeon Cho, Dong-Soo Park, Jong-Hee Lee, Soon-Wook Kwon, Sumin Jo
    Korean Journal of Breeding Science.2024; 56(3): 225.     CrossRef
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Genome-Wide Association Study for Cold Tolerance in Rice Seedlings under Cold-Water Treatment
Na-Eun Kim, Soon-Wook Kwon, Jeonghwan Seo, Tae-Ho Ham, Joohyun Lee
Plant Breed. Biotech. 2021;9(4):345-354.   Published online December 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.4.345

Rice is a temperature-sensitive crop, its yield is severely affected by low temperature, especially cold stress at the seedling stage will delay heading. To understand the genetic basis of cold tolerance, we evaluated the cold tolerance at the seedling stage of 136 rice accessions. To evaluate cold tolerance, we treated rice seedlings with cold water irrigation for ten days and scored the cold tolerance on a 1-9 scale, based on their low-temperature response and subsequent recovery. The genome-wide association study for cold tolerance revealed seven QTLs on chromosomes 1, 3, 6, 7, 10, and 12. The genomic region of the qCWS7 on chromosome 7 overlapped with a previously reported QTL associated with cold tolerance in the germinating stage. Similarly, qCWS1-1, qCWS1-2, qCWS3, qCWS6, and qCWS10 overlapped with a previously reported QTL associated with drought-stress tolerance. Subsequent bioinformatic and haplotype analyses suggested that five candidate genes affect cold tolerance: Os01g0228600 encoding a cytosolic hydroxypyruvate reductase, Os03g0115000 encoding a cupredoxin domain containing protein, Os06g0612800 encoding a stress-associated protein (SAP) gene family, Os12g0552500 encoding a universal stress protein (USP), and Os10g0482900 encoding a thioredoxin fold domain containing protein.

Citations

Citations to this article as recorded by  
  • Analysis of quantitative trait loci and candidate gene exploration associated with cold tolerance in rice (Oryza sativa L.) during the seedling stage
    Sumin Jo, Seong-Gyu Jang, Sais-Beul Lee, Ji-Yoon Lee, Jun-Hyeon Cho, Ju-Won Kang, Yeongho Kwon, So-Myeong Lee, Dong-Soo Park, Soon-Wook Kwon, Jong-Hee Lee
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • Genome-wide Association Study for Cold Tolerance at Seedling Stage Using a Core Collection of Korean Rice
    Sa-Eun Park, Ngoc Ha Luong, Sang-Nag Ahn, Kyu-Chan Shim
    Journal of Agriculture & Life Science.2025; 59(2): 13.     CrossRef
  • Predicting the influence of extreme temperatures on grain production in the Middle-Lower Yangtze Plains using a spatially-aware deep learning model
    Zijun Mu, Junfei Xia
    PeerJ.2024; 12: e18234.     CrossRef
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Method and Technology

A Quick and Simple In-house Screening Protocol for Cold-Tolerance at Seedling Stage in Rice
Hasina Khatun, Partha S Biswas, Hung Goo Hwang, Kyung-Min Kim
Plant Breed. Biotech. 2016;4(3):373-378.   Published online August 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.3.373

Cold stress is an emerging threat for rice production in Bangladesh particularly in Boro season (winter rice) at seedling stage. Cold stress during seedbed stage or early establishment stage at the main field induces severe seedling mortality that increases cost cultivation and delays crop establishment and ultimately entails into low yield. Development of sustainable cold tolerant high yielding rice varieties warrants an efficient and economic screening technique of germplasms and breeding population. The protocols for cold screening that so far have been used by the breeders and reported in literature are generally dependent on natural cool temperature and/or expensive climate chamber. In this paper, we report an in-house screening protocol that requires less than three weeks to complete the screening cycle and can be used all year round for mass screening of breeding population.

Citations

Citations to this article as recorded by  
  • Stage-specific screening reveals differential resilience response to cold stress in rice
    Fahamida Akter, Partha S. Biswas, Abul Kalam Mohammad Aminul Islam, Mohammad Sharif Raihan, Md. Mizanur Rahman, Khandakar Md. Iftekharuddaula, Mohammad Rafiqul Islam, John Damien Platten, Md Ashrafuzzaman
    PLOS One.2026; 21(4): e0338290.     CrossRef
  • Effects of low-temperature stress at different growth stages on rice physiology, pollen viability and yield in China’s cold region
    Lifeng Guo, Xiaodong Du, Jianing Chang, Jingjin Gong, Zheng Chu, Jiajia Lv, Lixia Jiang, Xi Liang
    PLOS One.2025; 20(8): e0329441.     CrossRef
  • Development of a Seedling Screening Method for Low-Temperature Tolerance in Pumpkin (Cucurbita moschata) and Selection of the Tolerant Resources for Rootstock of Cucumber
    Chae-Rin You, Hemasundar Alavilli, Kihwan Song
    Plant Breeding and Biotechnology.2022; 10(2): 102.     CrossRef
  • Contribution of IR20 and IR64 in Developing Three Bangladeshi Popular Rice Cultivars
    MM Emam Ahmed, Avijit Biswas, Sadia Afrin
    Plant Breeding and Biotechnology.2022; 10(2): 81.     CrossRef
  • Phenotypic and Molecular Characterization of Rice Genotypes’ Tolerance to Cold Stress at the Seedling Stage
    Nasira Akter, Partha Sarathi Biswas, Md. Abu Syed, Nasrin Akter Ivy, Amnah Mohammed Alsuhaibani, Ahmed Gaber, Akbar Hossain
    Sustainability.2022; 14(9): 4871.     CrossRef
  • Genome-Wide Association Study Reveals the Genetic Basis of Chilling Tolerance in Rice at the Reproductive Stage
    Byeong Yong Jeong, Yoonjung Lee, Yebin Kwon, Jee Hye Kim, Tae-Ho Ham, Soon-Wook Kwon, Joohyun Lee
    Plants.2021; 10(8): 1722.     CrossRef
  • Responses of Grain Yield and Yield Related Parameters to Post-Heading Low-Temperature Stress in Japonica Rice
    Iftikhar Ali, Liang Tang, Junjie Dai, Min Kang, Aqib Mahmood, Wei Wang, Bing Liu, Leilei Liu, Weixing Cao, Yan Zhu
    Plants.2021; 10(7): 1425.     CrossRef
  • Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI)
    Partha S. Biswas, Hasina Khatun, Nomita Das, Md. Mahathir Sarker, M. Anisuzzaman
    3 Biotech.2017;[Epub]     CrossRef
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Research Articles
Cold Stress Evaluation among Maize (Zea mays L.) Inbred Lines in Different Temperature Conditions
Muhammad Qudrat Ullah Farooqi, Ju Kyong Lee
Plant Breed. Biotech. 2016;4(3):352-361.   Published online August 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.3.352

Maize (Zea mays L.) is a crop in a tropical region which resists growing under sensitive temperature. This study was conducted to evaluate the performance of Canadian maize inbred lines under controlled cold stress conditions (5°C, 10°C, and 23°C). Data were recorded by measuring germination rate, index, root length, and seed vigour index values. Five higher and three lower tolerant inbred lines were shortlisted. The data were analyzed using analysis of variance, while mean values were compared using Tukey’s Honest Significant Difference Test at α=0.05 and at α=0.01. Using Genstat software, correlation was done. A strong correlation (P<0.05) was found between germination rate and germination index under all stress conditions. Root length and vigour index were also strongly correlated with germination rate under 5°C stress condition and compared to 10°C and 23°C stress conditions. Our results suggested that five (CO439, CO438, CO450, CO435, and CO445) among 22 maize inbred lines performed better under 5°C cold stress condition and thus had the potential to develop maize hybrids to increase grain yield under environmentally stressful conditions in South Korea.

Citations

Citations to this article as recorded by  
  • The Effect of Plasma-Activated Water on Zea mays L. Landraces Under Abiotic Stress
    Paula-Maria Galan, Silvia Strajeru, Danela Murariu, Catalin-Ioan Enea, Denisa-Elena Petrescu, Alina-Carmen Tanasa, Dumitru-Dorel Blaga, Livia-Ioana Leti
    Agriculture.2025; 15(19): 2037.     CrossRef
  • Low temperature elicits differential biochemical and antioxidant responses in maize (Zea mays) genotypes with different susceptibility to low temperature stress
    Salika Ramazan, Hilal Ahmad Qazi, Zahoor Ahmad Dar, Riffat John
    Physiology and Molecular Biology of Plants.2021; 27(6): 1395.     CrossRef
  • Genome-wide association mapping in maize: status and prospects
    Kumari Shikha, J. P. Shahi, M. T. Vinayan, P. H. Zaidi, A. K. Singh, B. Sinha
    3 Biotech.2021;[Epub]     CrossRef
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Optimization of Temperature Regime to Screen Cold Tolerant Rice Seedlings
Ung-Jo Hyun, Sang-Min Yeo, Sang-Bok Lee, Jeong-Heui Lee, Jong-Min Jeong, Yeaul-Kyu Seong, Dae-Ha Seo, Yong-Jae Won, Eok-Keun Ahn, Jeom Ho Lee, Jun-Cheol Mun, Cheol-Seong Jang
Plant Breed. Biotech. 2016;4(2):176-187.   Published online May 31, 2016
DOI: https://doi.org/10.9787/PBB.2016.4.2.176

Low temperature stress at the seedling stage of rice is an important factor causing the leaf discoloration, wilting and consequently leads to non-uniform crop maturation. In order to screen the cold tolerance elite lines efficiently, the five cold treatment conditions with different water and air temperature were designed and treated at seedling stage. For the evaluation of seedling tolerance, the injury was scored by visual rate and measured by Soil and Plant Analyzer Development (SPAD) meter. In the reactions of varieties for each treatment, the treatment ‘B’ condition, 12ºC mean water with 24ºC mean air, shows clear discoloration, so it’s correlation coefficient was highest (r=−0.9, P<0.0001) among the treatments. In the treatment condition for screening the cold-tolerance elite line, the cultivar, treatment and their interaction significantly affect the SPAD value. The ‘A’ treatment, 12ºC mean water with 34ºC mean air, was the best way to observe the variation between the elite lines. On the basis of the Duncan’s test for SPAD value of cultivars, Keumo (moderate tolerant), Saetbyeol (sensitive) and Seolak (tolerant) were selected as check varieties. To study its impacts at the paddy field, the changes of crop characteristics such as height, panicle length, number of tiller and heading were investigated. In later growth period, the seedling treatment impact at the paddy field leads to heading delay. Due to the low temperature stress at the seedling stage induced by 12ºC mean cold water, Japonica and Tongil group shows the heading delay 4 to 7 and 8 to 11 days respectively.

Citations

Citations to this article as recorded by  
  • Genome-wide Association Study for Cold Tolerance at Seedling Stage Using a Core Collection of Korean Rice
    Sa-Eun Park, Ngoc Ha Luong, Sang-Nag Ahn, Kyu-Chan Shim
    Journal of Agriculture & Life Science.2025; 59(2): 13.     CrossRef
  • Identification of QTLs Related to Plant Growth at Low Temperatures in the Seedling Stage of Tongil Type Rice after Transplanting
    Seong-Gyu Jang, Ji-Yoon Lee, Ju-Won Kang, Youngho Kwon, So-Myeong Lee, Sais-Beul Lee, Jun-Hyeon Cho, Dong-Soo Park, Jong-Hee Lee, Soon-Wook Kwon, Sumin Jo
    Korean Journal of Breeding Science.2024; 56(3): 225.     CrossRef
  • Haplotype analysis of Tongil-type rice varieties through sequence polymorphism analysis of cold tolerance-enhancing genes
    Youngeun Lee, Sais-Beul Lee, Ju-Won Kang, Jun-Hyeon Cho, Dong-Soo Park, Jong-Hee Lee, Dongjin Shin, Byung Jun Jin
    Journal of Plant Biotechnology.2024;[Epub]     CrossRef
  • Temporal Changes of Leaf Spectral Properties and Rapid Chlorophyll—A Fluorescence under Natural Cold Stress in Rice Seedlings
    Árpád Székely, Tímea Szalóki, Mihály Jancsó, János Pauk, Csaba Lantos
    Plants.2023; 12(13): 2415.     CrossRef
  • Efficient Cold Tolerance Evaluation of Four Species of Liliaceae Plants through Cell Death Measurement and Lethal Temperature Prediction
    Woo-Hyeong Yang, Seong-Hyeon Yong, Dong-Jin Park, Sung-Jin Ahn, Do-Hyun Kim, Kwan-Been Park, Eon-Ju Jin, Myung-Suk Choi
    Horticulturae.2023; 9(7): 751.     CrossRef
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Expression of Basic Helix-Loop-Helix Transcripts During Low Temperature Treatments in Grapevines
Seon Ae Kim, Soon Young Ahn, Seung Heui Kim, Jeom Hwa Han, Hae Keun Yun
Plant Breed. Biotech. 2014;2(2):110-116.   Published online June 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.2.110

The differential expression of six basic helix-loop-helix (bHLH) genes in response to low temperatures was studied by evaluating their mRNA levels in the buds and shoots of grapevines. Comparison of the amino acid sequences deduced from nucleotide sequences of the bHLH genes in Vitis labruscana transcripts revealed homologies ranging from 58.8% (VlCEbHLH1 and VlCEbHLH4) to 8.2% (VvbHLH and VlCEbHLH3). Specific primers from unique regions of genes were obtained by alignment of nucleotide sequences and used to evaluate differential expression patterns of bHLH genes. The accumulation patterns of bHLH mRNAs were induced differentially and dependent on the treated temperatures, −20°C in the buds and −2°C and 4°C in the shoots of ‘Campbell Early’ and ‘Muscat Baily A’ grapevines. The bHLH genes showed differential expression patterns in response to low temperatures. In ‘Campbell Early’, the expression of VlCEbHLH1, VlCEbHLH2, and VlCEbHLH5 was up-regulated, while VlCEbHLH3 was down-regulated in response to −20°C cold stress. In ‘Muscat Bailey A’, the expression of all genes was rapidly up-regulated, peaking at 6 h, then decreasing at 12 h after treatment.

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The purpose of this study was to investigate responses of pear cultivars ‘Niitaka’ and ‘Chuwhangbae’ under short period heating on cold resistance level of flower buds. Experiment was conducted using annual shoots flower bud which were artificially heated (AH) during 72 hour at room condition (18–20°C). To assay for cold resistance, the cultivars were treated and observed under negative temperatures −10, −15, −20 and −25°C during the winter period in 2012 and 2013. Our findings revealed that ‘Chuwhangbae’ which was treated under control and artificial heating treatments was more resistant to low temperature than ‘Niitaka’ showing decreasing level of flower buds damages by mid-January although in early March an increasing level of damages was observed again. Cold resistant cultivar ‘Chuwhangbae’ responded more sensitively to external environments. This means that ‘Chuwhangbae’ restructures the plant protoplasts and process the transition to the new metabolic energy level in an efficient manner when triggered by effective negative temperatures thereby resulting in hardening process. We assume that this might be closely related with dormancy period, concentration of the mineral elements, water potential and transition processes of metabolism to the new energetic level. With a rise in temperature, cold tolerance in pear cultivars significantly decreased and this is related to intensive development of the floral organs. The chilling requirements for blossoming of ‘Niitaka’ was higher than ‘Chuwhangbae’.

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SSR Analysis of Genetic Diversity and Cold Tolerance in Temperate Rice Germplasm
Jung-Pil Suh, Young-Chan Cho, Jeong-Heui Lee, Sang-Bok Lee, Jae-Youn Jung, Im-Soo Choi, Myeong-Ki Kim, Chung-Kon Kim, Kshirod K. Jena
Plant Breed. Biotech. 2013;1(2):103-110.   Published online June 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.2.103

A total of 23 elite rice cultivars from eight countries were evaluated for cold tolerance using two screening methods at Chuncheon Substation, National Institute of Crop Science (NICS), Republic of Korea. The rice cultivars Jinbu, Mustaqillik, and Avangard showed cold tolerance and high spikelet fertility (63–79%) in cold-water irrigation screening. Under greenhouse screening, five cultivars (Giza 177, Avangard, Mustaqillik, Jinbu, and Jungan) showed high cold tolerance and high spikelet fertility (71–81%). Simple sequence repeat (SSR) marker analysis of 21 genotypes revealed two major clusters, the japonica and indica groups, with a genetic similarity of 0.69. Out of 21 rice cultivars, only four (Giza 178 from Egypt, Attey and Zakha from Bhutan, and Millin from Australia) fell under the indica cluster. The cold-tolerant varieties Jinbu, Mustaqillik, and Avangard were clustered with the japonica group, which had genetic similarity of 0.83. These varieties are considered as potential germplasm that will help diversify the japonica gene pool for cold-tolerant rice breeding. A one-way linear analysis of variance identified a significant relationship between individual alleles and traits. Three SSR markers were significantly associated with spikelet fertility under cold-water irrigation on chromosomes 1, 2, and 7. Five SSR markers were associated with spikelet fertility under a cool-environment greenhouse on chromosomes 8, 9, 10, and 12. The SSR markers associated with cold tolerance may also be useful as selection markers in indica/japonica cross combinations to improve cold tolerance.

Citations

Citations to this article as recorded by  
  • Cold stress resilience in rice: genotypic variation, yield traits, and GGE biplot insights
    Tanaya Bala, Sarita Pradhan, Twinkle Jena, Sujatha Patta, Simanta Mohanty, Kamini Kaushal, Megha Kumari, Sandeep Kumar Mallik, Manoj Kumar Rout
    Scientific Reports.2025;[Epub]     CrossRef
  • Identification and evaluation of high-performing advanced germplasm of rice through morphological and breeding value analysis
    Md. Ariful Islam, Md. Moniruzzaman Hasan, Mohammad Anwar Hossain, Md. Ashraful Haque, Md. Nur Alam Siddique, Md. Shamsuddoha, Muhammad Ashraful Habib, Sumaiya Sultana Risha
    Discover Agriculture.2024;[Epub]     CrossRef
  • Mitigating cold stress in rice: a study of genotype performance and sowing time
    Yasser Z. El-Refaee, Hany S. Gharib, Shimaa A. Badawy, Eman M. Elrefaey, Samira A.F. El-Okkiah, Mohamed K. Okla, María Gabriela Maridueña-Zavala, Hamada AbdElgawad, Amira M. El-Tahan
    BMC Plant Biology.2024;[Epub]     CrossRef
  • Selection of rice breeding lines for resistance to biotic and abiotic stresses
    A. Amirova, B. Usenbekov, Kh. Berkimbay, D. Mynbayeva, S. Atabayeva, G. Baiseitova, A. Meldebekova, Zh. Zhunusbayeva, S. Kenzhebayeva, S. Mukhambetzhanov
    Brazilian Journal of Biology.2024;[Epub]     CrossRef
  • Phenotypic and Molecular Characterization of Rice Genotypes’ Tolerance to Cold Stress at the Seedling Stage
    Nasira Akter, Partha Sarathi Biswas, Md. Abu Syed, Nasrin Akter Ivy, Amnah Mohammed Alsuhaibani, Ahmed Gaber, Akbar Hossain
    Sustainability.2022; 14(9): 4871.     CrossRef
  • Screening of rice germplasms (Oryza sativa L.) for seedling stage cold tolerance utilizing morphological and molecular markers
    Brijesh Kumar Singh, Monoj Sutradhar, Chayanika Lahkar, Amit Kumar Singh, N.G. Tombisana Meetei, Nirmal Mandal
    Ecological Genetics and Genomics.2022; 24: 100128.     CrossRef
  • Genetic relationship of tropical region‐bred temperate japonica rice (Oryza sativa) plants and their grain yield variations in three different tropical environments
    Jeom‐Sig Lee, Gideon Torollo, Alexis Ndayiragije, Jean Berchmans Bizimana, Il‐Ryong Choi, Alaine Gulles, Un‐Sang Yeo, O‐Young Jeong, Shoba Venkatanagappa, Bo‐Kyeong Kim, Sang Nag Ahn
    Plant Breeding.2018; 137(6): 857.     CrossRef
  • Agro-Morphological Evaluation of Rice (Oryza sativa L.) for Seasonal Adaptation in the Sahelian Environment
    Daba Ndour, Diaga Diouf, Isaac Bimpong, Abdoulaye Sow, Ghislain Kanfany, Baboucarr Manneh
    Agronomy.2016; 6(1): 8.     CrossRef
  • Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people’s republic of Korea (DPRK; North Korea)
    HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won, Susan R McCouch
    Rice.2014;[Epub]     CrossRef
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Differential Expression Screening of Defense Related Genes in Dormant Buds of Cold-Treated Grapevines
Seon Ae Kim, Soon-Young Ahn, Jae Hyun Han, Seung Heui Kim, Jung Ho Noh, Hae Keun Yun
Plant Breed. Biotech. 2013;1(1):14-23.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.014

Grape (Vitis spp.), which is an important economic fruit crop worldwide, is the fourth most common fruit produced in Korea. Low temperature is one of the most important environmental factors that affect the successful cultivation of grapes. To screen for specific expression of abiotic stress-related genes against cold treatment in ‘Campbell Early’ and ‘Muscat Bailey A’ grapevines, the expression of various defense-related genes was investigated by real-time PCR and semi-quantitative RT-PCR. Among 67 genes analyzed by real-time PCR and RT-PCR, 43 and 10 were found to be up-regulated, while 4 and 37 were down-regulated in low temperature treated ‘Campbell Early’ and ‘Muscat Baily A’ grapevines, respectively. Genes encoding cold induced protein (CIP), lipoxygenase (LOX), glutathione S-transferase (GST), polygalacturonase-inhibiting protein (PGIP), and cold acclimation specific protein (CAS15A) were up-regulated, while those encoding cinnamyl alcohol dehydrogenase 2 (CAD2) and cold acclimation protein (WCS120) were down-regulated by low temperature treatment in both ‘Campbell Early’ and ‘Muscat Bailey A’. These changes in gene expression showed that defense response-related genes for cold acclimation were induced and wheat cold-specific gene decreased in grapevines. Among tested genes, the transcript levels of CLP, cell wall protein (CW), TIP, TLP, and WRKY transcription factor 10 (WRKY10) increased considerably in response to low temperature in ‘Campbell Early’ grapevine. These findings suggest that differentially expressed genes could be utilized as candidates for useful genetic resources and molecular markers after additional confirmation in various grapevine cultivars treated with low temperature in breeding programs for grapes with cold-tolerance.

Citations

Citations to this article as recorded by  
  • Changes in cold tolerance and biochemical responses to air temperature parameters: A case study of three commercial grapevine buds
    Gülhan Gülbasar Kandilli, Serkan Candar, Gökhan Söylemezoğlu
    Scientia Horticulturae.2025; 341: 113964.     CrossRef
  • Evaluation of the dual role of chlorine dioxide as an antimicrobial agent and defense elicitor against Botrytis cinerea in grapevines
    Srinivasan Ramalingam, Soon Young Ahn, Zar Le Myint, Hee Young Jung, Seung Yeol Lee, Jung A Ryu, Sang-Min Lee, Hae Keun Yun
    Horticulture, Environment, and Biotechnology.2024; 65(6): 957.     CrossRef
  • Profiling the lncRNA–miRNA–mRNA interaction network in the cold-resistant exercise period of grape (Vitis amurensis Rupr.)
    Weifeng Ma, Lijuan Ma, Zonghuan Ma, Wenfang Li, Shixiong Lu, Huimin Gou, Juan Mao, Baihong Chen
    Chemical and Biological Technologies in Agriculture.2024;[Epub]     CrossRef
  • UV-C treatment elicits resistant responses against Botrytis cinerea infection and the improvement of fruit characteristics in grapevines
    Srinivasan Ramalingam, Zar Le Myint, Soon Young Ahn, Jung A. Ryu, Sang-min Lee, Hae Keun Yun
    Horticulture, Environment, and Biotechnology.2024; 65(4): 707.     CrossRef
  • The polygalacturonase-inhibiting protein PpPGIP1, positively regulates vacuolar invertase activity via a protein-protein interaction with PpVIN2 in peach fruit
    Yingying Wei, Yihui Mao, Yinli Gao, Yi Chen, Jiachang Sun, Xingxing Wang, Shu Jiang, Feng Xu, Hongfei Wang, Xingfeng Shao
    Scientia Horticulturae.2023; 320: 112209.     CrossRef
  • An overview of drought stress in grapevine
    Muhammad Abi Waqas, Amina Shahid, Fatima Rasool, Ahmar Bashir, Zarnain Raheem
    Journal of Horticultural Science & Technology.2021; : 128.     CrossRef
  • Transcriptome analysis of grapevine shoots exposed to chilling temperature for four weeks
    Seon Ae Kim, Soon Young Ahn, Hae Keun Yun
    Horticulture, Environment, and Biotechnology.2016; 57(2): 161.     CrossRef
  • Transcriptomic analysis of ‘Campbell Early’ and ‘Muscat Bailey A’ grapevine shoots exposed to freezing cold stress
    Seon Ae Kim, Hae Keun Yun
    Journal of Plant Biotechnology.2016; 43(2): 204.     CrossRef
  • Current status and prospects of genomics and bioinformatics in grapes
    Youn Young Hur, Sung Min Jung, Hae Keun Yun
    Journal of Plant Biotechnology.2015; 42(4): 298.     CrossRef
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QTL Mapping of Cold Tolerance at the Seedling Stage using Introgression Lines Derived from an Intersubspecific Cross in Rice
In-Kyu Park, Chang-Sik Oh, Dong-Min Kim, Sang-Min Yeo, Sang-Nag Ahn
Plant Breed. Biotech. 2013;1(1):1-8.   Published online March 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.1.001

Low-temperature stress is an important factor controlling the growth and development of rice (Oryza sativa L.) in temperate region. In this study, a molecular linkage map consisting of 136 SSR markers was employed to identify QTL associated with cold tolerance at the seedling stage. 80 recombinant inbred lines (RILs) from an intersubspecific cross between Milyang23 (O. sativa ssp. Indica) and Hapcheonaengmi3, a japonica weedy rice and the parents were evaluated for leaf discoloration and SAPD value of seedlings. Rice plants were grown for 15 days in the low-temperature condition (13/20°C day/night) and the control condition (25/20°C day/night) in the growth chamber. The degree of leaf discoloration showed a highly significant correlation with the SPAD value in the low-temperature plot (r = −0.708, P < 0.0001). A total of four QTLs for SPAD were identified and the phenotypic variance explained by each QTL ranged from 5.4 to 16.0%. Two QTLs detected in the control condition were located on chromosomes 2 and 5, respectively. Two QTL on chromosomes 1 and 4 were detected at the low-temperature condition and Hapcheonaengmi3 alleles increased the SPAD values at these loci. Substitution mapping was conducted to delimit the position of qSPA-4 using introgression lines derived from the same cross. Results indicated that qSPA-4 was located in a 810-Kb region flanked by RM16333 and RM16368. The results indicated that Hapcheonaengmi3 contains QTL alleles that are likely to improve cold tolerance of Indica rice.

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