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"Wheat"

Research Article

Genetic Identification of Yellow Rust Disease Resistance in Bread Wheat (Triticum aestivum L.) Samples Using DNA Markers
D.Sh. Shokirova, A.N. Kholikov, Kh.S. To, rakulov, S.K. Meliev, Sh.A. Samanov, A.A. Dulanazarov, M.V. Turdaliev, N.Y. Azizov, A.A. Dolimov
Plant Breed. Biotech. 2026;14:139-151.
Published online May 12, 2026
DOI: https://doi.org/10.9787/PBB.2026.14.139

In this study, molecular-genetic analyses were carried out to identify resistance to yellow rust (Puccinia striiformis f. sp. tritici) in soft wheat (Triticum aestivum L.) samples. Yellow rust is one of the most destructive diseases of wheat worldwide, causing significant yield losses and posing a serious threat to global food security, particularly under changing climatic conditions. The disease is also highly prevalent in Central Asian countries, including Uzbekistan and Tajikistan, where wheat is a staple crop and ensuring stable production is of strategic importance. A total of 68 wheat genotypes were examined and genotyped using 42 highly polymorphic DNA markers. Based on the obtained phenotypic and genotypic data, association analysis was performed using the TASSEL and STRUCTURE programs. To identify genetic associations, GLM (General Linear Model) and MLM (Mixed Linear Model) statistical models were applied. The analysis revealed that the following markers showed significant and reliable associations with yellow rust resistance: Barc0187 (p=0.0040), Gwm340 (p=0.0043), Barc008 (p=0.0132), and Gwm111 (p=0.0147). These markers are recommended as reliable molecular indicators for identifying yellow rust-resistant genotypes and for improving marker-assisted selection (MAS) strategies in future wheat breeding programs.

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Article

Genetic Control of Resistance Mechanisms Toward Brown Planthopper in Rice
Urtnasan Ganbaatar, Ganbaatar Bodisad, Tuyatsetseg Jambal, Bayarsukh Noov, Dulguun.Dorjgotov, Madhav Subedi
Plant Breed. Biotech. 2025;13:5-14.
Published online February 7, 2025
DOI: https://doi.org/10.9787/PBB.2025.13.5

The storage proteins in wheat, particularly the high molecular weight glutenin subunits (HMW-GS), play crucial roles in the processing of flour and the quality of bread made from common wheat. These subunits are encoded by the Glu-A1, Glu-B1, and Glu-D1 loci. This study aimed to determine the composition of high molecular weight glutenin subunits in 89 Mongolian cultivars of spring wheat using KASP markers and sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The result showed the presence of the 5+10 allele at the Glu-D1 locus in Mongolian-developed varieties was confirmed through SDS-PAGE, providing evidence for the synthesis of high molecular weight glutenin subunits. The uniform presence of high molecular weight glutenin subunit alleles across the tested cultivars contributes valuable insights into the bread-making quality of Mongolian wheat varieties.

Citations

Citations to this article as recorded by  
  • Comparative Transcriptomic Analysis of High- and Low-Protein Wheat Lines Reveals Differential Nitrogen Responses at the Seedling Stage
    Min Jeong Hong, Chul Soo Park, Dae Yeon Kim
    Agronomy.2026; 16(6): 628.     CrossRef
  • Recent Advances in Nitrogen Use Efficiency (NUE) Research in Wheat
    Min Jeong Hong, Dae Yeon Kim
    Korean Journal of Breeding Science.2025; 57(3): 251.     CrossRef
  • Latest Research Trends in Reducing the Immunogenicity of Wheat
    Sora Lee, Jong-Yeol Lee, Sichul Lee, Jae-Ryeong Sim, Sewon Kim, Woo-Suk Cho
    Korean Journal of Breeding Science.2025; 57(2): 65.     CrossRef
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Research Articles

Genetic Diversity Analysis and DNA Fingerprinting of Bread Wheat (Triticum Aestivum L.) Cultivars in Uzbekistan Using SSR Markers
Jurabek K. Norbekov, Naim N. Khusenov, Ilkhom B. Salokhutdinov, Ilyos S. Normamatov, Umid A. Boykobilov, Ravshan I. Muxammadaliyev, Maftuna M. Kholmuradova, Abdusalom Kh. Makamov, Ozod S. Turaev, Dilrabo K. Ernazarova, Fakhriddin N. Kushanov, Zabardast T. Buriev
Plant Breed. Biotech. 2024;12:193-209.   Published online December 24, 2024
DOI: https://doi.org/10.9787/PBB.2024.12.193

Bread wheat (Triticum aestivum L.) is a fundamental crop worldwide, playing a crucial role in ensuring food security for human beings. Understanding the genetic diversity of wheat cultivars and developing genetic passports through DNA fingerprinting is essential for preventing varietal duplication enhancing breeding diversity and protecting breeders' rights globally. This study investigated the genetic diversity, phylogenetic relationships, and allelic frequencies of 32 Uzbekistan bread wheat cultivars using 66 polymorphic simple sequence repeat (SSR) markers. Unique marker alleles were identified and used to develop genetic passports for the cultivars. The results showed that the primers Barc181, Wmc522, Wmc407, Wms18, Cfa2201, Wms294, Cfd76, Wmc73, Wmc486, Cfa220, Wmc314, And Wms495 are reliable SSR markers for assessing genetic polymorphism in Uzbek wheat cultivars.

Citations

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  • Genetic analysis of fusarium wilt resistance in Upland cotton germplasm ( Gossypium hirsutum L.)
    Naim N. Khusenov, Jurabek K. Norbekov, Umid A. Boykobilov, Zebo S. Yuldosheva, Ilyos S. Normamatov, Abdusalom Kh. Makamov, Mirzakamol S. Ayubov, Mukhtor M. Darmanov, Akmal M. Asrorov, Zabardast T. Buriev, Maftuna U. Makhmudova, Ozod S. Turaev, John Z. Yu,
    Journal of Plant Interactions.2025;[Epub]     CrossRef
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QTL Mapping for Heading Date and Yield-Related Traits in a Doubled Haploid Population Derived from Two Korean Wheat Cultivars
Sumin Hong, Kyeong-Min Kim, Changhyun Choi, Seong-Woo Cho, Chul Soo Park, Youngjun Mo
Plant Breed. Biotech. 2023;11(3):197-207.   Published online September 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.3.197

Understanding the genetics underlying heading date and yield-related traits is essential in wheat breeding for maximizing productivity under different environments. Using doubled haploid lines derived from two Korean wheat cultivars, we identified seven stable quantitative trait loci (QTLs) for yield-related traits, i.e., days to heading date (QDhd.jbnu-3B, QDhd.jbnu-6B, and QDhd.jbnu-7D), culm length (QCl.jbnu-6A), thousand kernel weight (QTkw.jbnu-6A), kernels per spike (QKps.jbnu-3B) and test weight (QTw.jbnu-1A). Compared to the lines carrying the allele for late heading, those carrying the allele for early heading at QDhd.jbnu-3B, QDhd.jbnu-6B, and QDhd.jbnu-7D headed 3.1, 2.0, and 1.7 days earlier, respectively. Interestingly, when the alleles for early heading at the three QTLs were accumulated, heading date was accelerated by approximately one week, indicating that these QTLs provide useful genetic resources to fine-tune heading date. However, as the alleles for early heading at all three QTLs were associated with decreased kernels per spike, caution is required when deploying them to minimize the negative impacts on yield. Our study provides useful information for developing wheat cultivars with optimal heading date and enhanced productivity.

Citations

Citations to this article as recorded by  
  • Variations in Major Agronomic Traits of Durum Wheat Germplasm Under Different Nitrogen Fertilization Levels
    Hosun Cheon, Sun-Hwa Kwak, Sieun Choi, Sukyeung Lee, Jinhee Park, Kyung-Min Kim, Chul Soo Park, Youngjun Mo
    Korean Journal of Breeding Science.2024; 56(3): 281.     CrossRef
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Case Report

Anther Culture in Crop Plants: Progress and Perspectives
M. Thoihidul Islam, Mohammad Rashid Arif, Md. Toufiq Hasan, Arif Hasan Khan Robin
Plant Breed. Biotech. 2023;11(2):69-96.   Published online June 1, 2023
DOI: https://doi.org/10.9787/PBB.2023.11.2.69

A resurrection has started in haploid and double haploid research in the twenty-first century. The haploid and double haploid could be achieved through in vivo and in vitro anther and microspore culture techniques. Fixing the homozygosity is the most striking benefit of androgenesis. Various factors like genotypic dependency, growth condition, developmental stage of the microspore, pre-treatment, culture media, regeneration media, growth hormones, and various chemicals have a direct effect. Wheat, rice, Brassica, and tobacco are the notable crops where anther and microspore culture has been utilized. These haploidy and double haploidy through anther culture served many purposes of basic and applied research. Especially, double haploid cultivars have been cultivating around the globe. In addition, for chromosome mapping, QTL mapping, marker-assisted selection, marker-assisted backcrossing, mutation breeding, genome-wide association study, genomic engineering, and genome editing, androgenesis based haploid and double haploid plants have been exploited due to the effectiveness. Recently, researchers are trying to explain albinism that happens during anther culture from an epigenetic perspective. Further prospects of haploid and doubled haploid research through anther culture have been described in this review.

Citations

Citations to this article as recorded by  
  • Anther culture in rice: from an experimental model to breeding practice
    B. Usenbekov, S. Mukhambetzhanov, T. Kurbangaliyeva, A. Amirova, I. Sartbayeva, E. Kirshibaev, Ye. Gabdullina, D. Yerezhepov, A. Yerezhepov
    Fundamental and Experimental Biology.2026; 12131(1): 72.     CrossRef
  • Mitochondrial RNA helicase SUV3 modulates photosynthetic efficiency and ROS homeostasis to confer salinity tolerance in marker-free rice (Oryza sativa L. cv. IR64)
    Swetaleena Mishra, Ranjan Kumar Sahoo, Deepak Bhardwaj, Sarvajeet Singh Gill, Sudhir Kumar Sopory, Narendra Tuteja
    Current Plant Biology.2026; 47: 100610.     CrossRef
  • Micropropagation, Somatic Embryogenesis, and Haploid Induction in Passiflora: Advances, Biological Constraints, and Breeding Prospects
    Mohammad Gul Arabzai, Ting Wu, Nazir Khan Mohammadi, Niaz Mohammad Inqilabi, Omotola Adebayo Olunuga, Yuan Qin, Lulu Wang
    Horticulturae.2026; 12(4): 497.     CrossRef
  • Haploid and Doubled Haploid Platforms for Wheat Improvement: Methods and Applications
    Aidana Nurtaza, Damira Dyussembekova, Assel Yessimseitova, Indira Samatova, Timur Savin, Almagul Kakimzhanova
    Agronomy.2026; 16(8): 797.     CrossRef
  • Haploid Production in Cannabis sativa: Recent Updates, Prospects, and Perspectives
    S.M. Ahsan, Md. Injamum-Ul-Hoque, Nayan Chandra Howlader, Md. Mezanur Rahman, Md Mahfuzur Rahman, Md Azizul Haque, Hyong Woo Choi
    Biology.2025; 14(6): 701.     CrossRef
  • Advances in Anther Culture-Based Rice Breeding in China
    Xinxing Chen, Sanhe Li, Wenjun Zha, Changyan Li, Lei Zhou, Aiqing You, Yan Wu
    Plants.2025; 14(11): 1586.     CrossRef
  • Identification of DMP Family Members in Solanaceous Vegetables Potentially Involved in Haploid Induction
    Xuan Deng, Wenjian Zhong, Bo Liu, Xinyan Shen, Zhiyong Ren, Yongen Lu, Xin Wang, Bo Ouyang
    Horticulturae.2025; 11(11): 1329.     CrossRef
  • Integrating in vitro breeding, BLUP prediction, and marker analysis to enhance rice yield, quality, and blast resistance
    Samah M. Abdelkhalek, Mohamed Abdelrahman, Tahany M. Mazal, Itoh Kimiko, Mostafa Elshenawy, Samah Aamer, Amr A. Hassan, Kotb A. Attia, Megahed Ammar
    Frontiers in Plant Science.2025;[Epub]     CrossRef
  • Çörek Otu (Nigella sativa L.) Anter Kültüründe Farklı Hormon Uygulamalarının Kallus İndüksiyonu Üzerindeki Etkileri
    Semra Güzel, Hüseyin Uysal
    Adnan Menderes Üniversitesi Ziraat Fakültesi Dergisi.2025; 22(2): 271.     CrossRef
  • Haploid plant production and flowcytometric evaluation of Lilium ledebourii (Baker) Boiss
    Mohsen Bagherian-Shamasbi, Esmaeil Chamani, Younes Pourbeyrami Hir, Hamid Reza Heydari
    Scientia Horticulturae.2025; 340: 113950.     CrossRef
  • Generic Workflow of a Highly Effective and Easy Anther Culture Method for Both Japonica and Indica Rice
    Guimei Guo, Shisen Liu, Shuwei Zhang, Linian Yang, Yingjie Zong, Nigel G. Halford, Ting He, Runhong Gao, Zhenzhu Guo, Longhua Zhou, Chenghong Liu, Shujun Wu, Zhiwei Chen
    Plants.2024; 13(17): 2531.     CrossRef
  • CRISPR/Cas9 and Anther Culture for Precision Double Haploid Line Production in Controlled Environments
    Avinash Sharma, Himanshu Pandey, Varucha Misra, Rajeev Kumar, Amit Vashishth, V. S. Devadas, A. K. Mall, Ashutosh, Megha Raghvan, Ajith Kumar Kesavan, Vishva Deepak Chaturvedi
    Plant Breeding.2024;[Epub]     CrossRef
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Research Articles
Effect of Wheat RING Type E3 Ligase TaMARCH9 Gene on Flowering Time in Transgenic Arabidopsis
Moon Seok Kim, Jae Ho Kim, Yong Weon Seo
Plant Breed. Biotech. 2022;10(4):224-231.   Published online December 1, 2022
DOI: https://doi.org/10.9787/PBB.2022.10.4.224

Grain yield in wheat is mostly governed prior to flowering during primordia development. Mature primordia development, floret fertility, and maximum grain number per spikelet are the three most important characteristics of spike development. The genes involved in primordia formation, on the other hand, have remained unclear. Here, we demonstrate molecular characterization of Triticum aestivum MARCH9 (TraesCS7A01G283700) which encodes RING domain, might play a positively regulating primordium and floret development until anthesis stages. TaMARCH9 expression level was highly induced at differentiation stages (WS 3-6) in Yeongkwang cultivar. TaMARCH9 exhibited ubiquitination activities and was localized to the plasma membrane using a transient expression system in tobacco. Moreover, overexpression of TaMARCH9 in Arabidopsis plant displayed early flowering phenotypes compared to wild-type. Some of flowering related genes such as FLC, MAF, FT and SOC were highly induced in TaMARCH9- overexpressing Arabidopsis plants. Our finding suggested that TaMARCH9 may act a key role in the formation of floret primordium development and/or flowering time in wheat.

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Genetic Diversity Analysis and Molecular Screening for Salinity Tolerance in Wheat Germplasm
Muhammad Abdul Hannan, Nihar Ranjan Saha, Swapan Kumar Roy, Sun-Hee Woo, Muhammad Shahidul Haque
Plant Breed. Biotech. 2021;9(3):185-198.   Published online September 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.3.185

Salinity is the most significant constraint to wheat cultivation in the salinity-affected areas. Saline-prone soils can be brought under cultivation by the development of salt-tolerant lines through molecular breeding aided by diversity analysis and molecular screening. The study aimed to screen for salinity tolerance and elucidate the extent of diversity among 75 wheat varieties and accessions. This molecular analysis and detection used 21 linked SSR markers. The study identified 202 alleles in 75 genotypes of wheat, giving 9.6 alleles on an average for salt tolerance screening. The mean polymorphism information content (PIC) of 0.7599 and the Nei’s (1973) gene diversity of 0.7856 were recorded. The accessions possess higher gene diversity and PIC than the cultivars. The average genetic similarity matrix coefficient was 0.60 within the range of 0.19 and 1.00. Similarity indices based UPGMA cluster analysis separated the 75 germplasm into six clusters. Eight genotypes grouped in sub-cluster Ib together with the positive control BINA Gom-1. Therefore, these eight genotypes were identified as potential salt-tolerant by molecular analysis using SSR markers linked to salinity. The gene diversity estimated, and the germplasm identified as potential salt-tolerant are promising for use in wheat breeding to incorporate salt tolerance in novel cultivars by marker-assisted breeding.

Citations

Citations to this article as recorded by  
  • Correlation of Root System Architecture at Early Seedling Stage and Coleoptile Length and Grain Properties of Korean Wheat Cultivars
    Kyeong-Min Kim, Sumin Hong, Myung-Goo Choi, Changhyun Choi, Myoung Hui Lee, Mira Yoon, Chon-Sik Kang, Ki-Chang Jang, Youngjun Mo, Chul Soo Park
    Korean Journal of Breeding Science.2024; 56(2): 113.     CrossRef
  • Evaluation of Cold Resistance at Seedling Stage for 70 Peanut Genotypes Based on Photosynthetic Fluorescence Characteristics
    Linmei Ye, Tao Wang, Renye Wu, Conghui Zheng, Liuqi Zhan, Jianhong Chen, Shengyao Guo, Yongkuai Chen
    Agronomy.2024; 14(8): 1699.     CrossRef
  • Microsatellite marker-based genetic diversity assessment among exotic and native maize inbred lines of Bangladesh
    Md. Amraul Islam, Md. Shahidul Alam, Md. Maniruzzaman, Muhammad Shahidul Haque
    Saudi Journal of Biological Sciences.2023; 30(8): 103715.     CrossRef
  • Research Advances in Diversity of Wheat Genetic Resources
    Do Yoon Hyun, Jae Yoon Kim
    Korean Journal of Breeding Science.2023; 55(4): 350.     CrossRef
  • Screening of salt-tolerant wheat (Triticum aestivum L.) through morphological and molecular markers
    Md. Hasanuzzaman, Nihar Ranjan Saha, Sayma Farabi, Md. Tahjib-Ul-Arif, Sabina Yasmin, Muhammad Shahidul Haque
    Cereal Research Communications.2023; 51(1): 87.     CrossRef
  • Effects of Exogenous Calcium on Adaptive Growth, Photosynthesis, Ion Homeostasis and Phenolics of Gleditsia sinensis Lam. Plants under Salt Stress
    Yun Guo, Yang Liu, Yan Zhang, Jia Liu, Zarmina Gul, Xiao-Rui Guo, Ann Abozeid, Zhong-Hua Tang
    Agriculture.2021; 11(10): 978.     CrossRef
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Assessment of Genetic Diversity in Durum and Bread Wheat Genotypes Based on Drought Tolerance and SSR Markers
Mahmoud A. El-Rawy, Mohamed I. Hassan
Plant Breed. Biotech. 2021;9(2):89-103.   Published online June 1, 2021
DOI: https://doi.org/10.9787/PBB.2021.9.2.89

Six durum and twelve bread wheat genotypes were evaluated under favorable and drought-stressed field conditions, and screened with thirty simple sequence repeats (SSR) markers. The traits studied were stomata frequency (STF), relative water content (RWC), flag leaf area (FLA), flag leaf weight (FLW), flag leaf dry matter content (FLD), chlorophyll a content (Chl.a), chlorophyll b content (Chl.b), grain yield/plant (GYP) and 1000-kerenl weight (TKW). Highly significant differences were observed among wheat genotypes for all the traits, indicating considerable genetic variation. Moderate to high broad-sense heritability estimates were observed for the studied traits. Under drought stress, GYP was positively correlated with RWC, FLA, FLW and TKW, whereas negatively correlated with STF. G3 (Svevo) and G6 (WK-12-1) were the most drought-tolerant durum wheat, whereas G11 (L.S-15) and G16 (SIDS-1) were the most drought-tolerant bread wheat genotypes. SSR markers analysis indicated considerable genetic variation between and within durum and bread wheat genotypes. The percentage of polymorphism ranged from 14.3% (Xgwm174-5D) to 100% (Xgwm294-2A and Xgwm573-7B), with an average of 61.4%. The polymorphism information content (PIC) ranged from 0.20 (Xwmc596-7A) to 0.48 (Xgwm294-2A), with an average of 0.33.The highest polymorphism (77.1%) was observed in the B genome followed by A (57.8%) and D (50.0%) genomes. Cluster analysis based on phenotypic data distinguished the most drought-tolerant genotypes (G6 and G11) from the remaining genotypes. Cluster analysis based on SSR markers distinguished durum from bread wheat genotypes. The study indicated that phenotypic data and SSR markers were effective in assessing the genetic diversity in the studied genotypes.

Citations

Citations to this article as recorded by  
  • Revealing Genetic Diversity and Drought Tolerance in Durum Wheat through Agro-Physiological and Molecular Approaches
    Ferhat Kızılgeçi, Aras Türkoğlu, Kamil Haliloğlu, Seval Eliş, Büşra Polat, Gaye Akçelik, Mehmet Yıldırım, Fatih Demirel, Jan Bocianowski
    Turkish Journal Of Field Crops.2026;[Epub]     CrossRef
  • Gene markers generating polygenic resistance in wheat - Bipolaris sorokiniana interaction pathosystem
    Fatemeh Qalavand, Mehdi Nasr Esfahani, Davood Amin Azarm, Maryam Monazzah, Marzie Motamedi, Niloufar Abbasi, Arman Nasr Esfahani, Mojtaba Mohammadi
    South African Journal of Botany.2025; 185: 182.     CrossRef
  • Molecular marker based analysis of allelic variation in the spring wheat genome
    Hafiz Ghulam Muhu Din Ahmed, Tao Yang, Muhammad Irfan Akram, Rashid Iqbal, Abdullah Ahmed Al-Ghamdi, Dunia A. Al Farraj
    Genetic Resources and Crop Evolution.2025; 72(5): 5393.     CrossRef
  • Genetic diversity of some bread wheat genotypes under water stress using morphological traits and SSR markers
    S.E Abd.Salam, E.E. Hassn, A.A. Hassan, Mohamed Abdelghany
    South African Journal of Botany.2025; 178: 360.     CrossRef
  • Genetic diversity analysis of Azerbaijani bread wheat (Triticum aestivum L.) genotypes with simple sequence repeat markers linked to drought tolerance
    Ruhangiz Mammadova, Zeynal Akparov, Ahmad Amri, Allah Bakhsh, Fida Alo, Shader Alizade, Nurlan Amrahov, Firuza Yunisova
    Genetic Resources and Crop Evolution.2025; 72(1): 315.     CrossRef
  • Association mapping for Striga resistance and agronomic‐related traits in sorghum
    Wilbert T. Mutezo, Moosa M. Sedibe, Justice Norvienyeku, Bingting Lai
    The Plant Genome.2025;[Epub]     CrossRef
  • Biochemical characteristics of bread wheat genotypes related to SSR markers in moisture stress conditions
    Fatemeh Bavandpouri, Ezatollah Farshadfar, Kianoosh Cheghamirza, Mohsen Farshadfar
    Genetic Resources.2025; 6(12): 171.     CrossRef
  • Agronomic and Molecular Identification of Drought-Tolerant Bread Wheat Varieties in Iran
    Arezoo Karkhaneh, Hooman Salari, Kianoosh Cheghamirza, Leila Zarei
    Journal of Plant Growth Regulation.2025; 44(6): 3039.     CrossRef
  • Multivariate Analysis Techniques and Tolerance Indices for Detecting Bread Wheat Genotypes of Drought Tolerance
    Ibrahim Al-Ashkar
    Diversity.2024; 16(8): 489.     CrossRef
  • Combining Genetic and Phenotypic Analyses for Detecting Bread Wheat Genotypes of Drought Tolerance through Multivariate Analysis Techniques
    Mohammed Sallam, Abdelhalim Ghazy, Abdullah Al-Doss, Ibrahim Al-Ashkar
    Life.2024; 14(2): 183.     CrossRef
  • Assessing Heat Stress Tolerance of Wheat Genotypes through Integrated Molecular and Physio-Biochemical Analyses
    Mohammed Sallam, Ibrahim Al-Ashkar, Abdullah Al-Doss, Khalid A. Al-Gaadi, Ahmed M. Zeyada, Abdelhalim Ghazy
    Agronomy.2024; 14(9): 1999.     CrossRef
  • Assessment of genetic variation among wheat genotypes for drought tolerance utilizing microsatellite markers and morpho-physiological characteristics
    Sheikh Faruk Ahmed, Jalal Uddin Ahmed, Mehfuz Hasan, Mohammed Mohi-Ud-Din
    Heliyon.2023; 9(11): e21629.     CrossRef
  • Molecular cytological analysis of alien introgressions in common wheat lines created by crossing of Triticum aestivum with T. dicoccoides and T. dicoccum
    О. A. Orlovskaya, I. N. Leonova, L. A. Solovey, N. I. Dubovets
    Vavilov Journal of Genetics and Breeding.2023; 27(6): 553.     CrossRef
  • Research Advances in Diversity of Wheat Genetic Resources
    Do Yoon Hyun, Jae Yoon Kim
    Korean Journal of Breeding Science.2023; 55(4): 350.     CrossRef
  • Assessment of Genetic Diversity of Bread Wheat Genotypes for Drought Tolerance Using Canopy Reflectance-Based Phenotyping and SSR Marker-Based Genotyping
    Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Eldessoky S. Dessoky, Mohammed Alqurashi, Salman Aloufi
    Sustainability.2022; 14(16): 9818.     CrossRef
  • Enzyme activity and population genetic structure analysis in wheat associated with resistance to Bipolaris sorokiniana-common root rot diseases
    Fatemeh Qalavand, Mehdi Nasr Esfahani, Jafar Vatandoost, Davood Amin Azarm
    Phytochemistry.2022; 200: 113208.     CrossRef
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Genetic Parameters and Multivariate Analysis to Determine Secondary Traits in Selecting Wheat Mutant Adaptive on Tropical Lowlands
Muh Farid, Nasaruddin Nasaruddin, Yunus Musa, Muhammad Fuad Anshori, Ifayanti Ridwan, Jekvy Hendra, Gatot Subroto
Plant Breed. Biotech. 2020;8(4):368-377.   Published online December 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.4.368

One of approaches to maintain the yield stability of the lowland tropical wheat is the use of secondary traits in the selection process. The identification of these characters requires a statistical approach in the form of genetic parameter analysis and multivariate analysis. The
objective
of this study was to determine the secondary traits of adaptive wheat mutants in the lowlands through the use of genetic parameters and multivariate analysis on the parameters. The study consisted of three field trials conducted in three different regencies, namely Jeneponto (135 m above sea level (asl)), Maros (100 m asl) and Bantaeng (125 m asl). The study used a nested design, where replications were nested in the environments. The genotype factors consisted of 20 genotypes repeated three times. 11 characters were observed including vegetative and reproductive characters. The analysis used consisted of repeatability, correlation, cluster analysis, principal component analysis, factor analysis, and cross print analysis. The overall results of the analysis indicate that the number of productive tillers is the main secondary trait for the selection of adaptive wheat in the lowlands. The character can be recommended for selection criteria in testing wheat lines in the lowlands to make an effective selection.

Citations

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  • Stability and adaptability analyses to identify suitable high-yielding maize hybrids using PBSTAT-GE
    Muhammad Azrai, Muh. Farid, Amin Nur, Roy Efendi, Salengke Salengke, Yunus Musa, Baharuddin Patandjengi, Tutik Kuswinanti, Sulaeha Thamrin, Willy Bayuardi Suwarno, Nining Nurini Andayani, Bunyamin Zainuddin, Hishar Mirsam, Slamet Bambang Priyanto, Suriani
    Open Agriculture.2025;[Epub]     CrossRef
  • Comprehensive evaluation of nitrogen fertilization impact on early maturing rice varieties using multivariate analysis and vegetation indices
    Yunus Musa, Rusnadi Padjung, Nasaruddin Nasaruddin, Muh Farid, Andang Suryana Soma, Achmad Kautsar Baharuddin, Muh. Fikri Al Qautzar, Resky Maulidina Fakhri, Madonna Casimero, Amin Nur, Mahmoud F. Seleiman, Majed Alotaibi, Nawab Ali, Muhammad Fuad Anshori
    Frontiers in Sustainable Food Systems.2025;[Epub]     CrossRef
  • Multivariate analysis and image-based phenotyping of cayenne fruit traits in selection and diversity mapping of multiple F1 cross lines
    Muhammad Fuad Anshori, Yunus Musa, Novaty Eny Dungga, Nuniek Widiayani, Arfina Sukmawati Arifin, A. Masniawati, Firmansyah, Muh Farid, Andi Dirpan, Andi Isti Sakinah, Nirwansyah Amier
    Reproduction and Breeding.2024; 4(4): 194.     CrossRef
  • A new concept in assessing adaptability index for superior potential cropping intensity in early-maturing rice
    Muhammad Fuad Anshori, Yunus Musa, Muh Farid, Muh Jayadi, Abd Haris Bahrun, Amir Yassi, Andi Amran Sulaiman, Yi Cheng Huang, Madonna Casimero, Lizzida Llorca, Willy Bayuardi Suwarno, Muh Mukhtadir Putra, Hasil Sembiring, Bambang Sapta Purwoko, Daniel O. W
    Frontiers in Sustainable Food Systems.2024;[Epub]     CrossRef
  • Selection of M5 mutant lines of wheat (Triticum aestivum L.) for agronomic traits and biomass allocation under drought stress and non-stressed conditions
    Athenkosi Makebe, Hussein Shimelis, Jacob Mashilo
    Frontiers in Plant Science.2024;[Epub]     CrossRef
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    Asian Journal of Plant Sciences.2024; 23(1): 88.     CrossRef
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Statistical and Machine Learning-Based FHB Detection in Durum Wheat
Nasrin Azimi, Omid Sofalian, Mahdi Davari, Ali Asghari, Naser Zare
Plant Breed. Biotech. 2020;8(3):265-280.   Published online September 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.3.265

Pathogens are the major causes of wheat crop yield losses, including the fungus Fusarium graminearum, an agent of Fusarium Head Blight (FHB). A better understanding of the relationship between plant morphological and biochemical traits and resistance to FHB can be effective in implementing a successful breeding program. This study investigated the relationship between FHB resistance as well as the morphological and biochemical traits in 20 durum wheat lines. Both morphological and biochemical traits were investigated using statistical tools. Therefore, analyses of variance, mean, as well as the correlation between the traits were con-sidered. In addition, for the morphological traits, cluster analyses were performed to identify similar genotypes in control and infected conditions. Furthermore, machine learning (ML) classification techniques, including Support Vector Machine (SVM), were proposed to detect the infected plants using morphological traits. The results show a great promise for the application of data-driven ML-based methods in plant breeding and disease detection.

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Polyethylene Glycol Induced Osmotic Stress Affects Germination and Seedling Establishment of Wheat Genotypes
Shatabdi Ghosh, Md. Abu Shahed, Arif Hasan Khan Robin
Plant Breed. Biotech. 2020;8(2):174-185.   Published online June 1, 2020
DOI: https://doi.org/10.9787/PBB.2020.8.2.174

Wheat is globally an important cereal crop. Environmental stress, especially drought stress can play an important role in the reduction of plant growth, specifically during germination in arid and semi-arid regions. Polyethylene glycol (PEG) treated hydroponic conditions create negative osmotic potential which is compared with moisture deficit stress. The main
objective
of this study was to investigate the effects of PEG 6000 induced moderate osmotic stress on germination indices of 22 wheat varieties. In order to study the effects of osmotic stress on germination indices in wheat cultivars, an experiment was conducted, using a completely randomized design with three replications under two different levels of PEG-6000: 0% and 10%. PEG stress significantly reduced percent germination, shoot length and root length. PEG stress significantly increased root-shoot ratio and oven dry weight. Principal component analysis revealed response of traits of tolerant wheat varieties under osmotic stress. Correlation study revealed the significant relationships among germination indices. The variety BARI Gom-30 recorded comparatively higher root length (6 cm), shoot length (7.8 cm), root-shoot ratio (1.37) followed by the variety Sonalika whereas the variety Kalaysona recorded the lowest root length (2.7 cm) and shoot length (2.8 cm) under PEG stress. Evolved information of this research including selected traits such as germination percentage, root-shoot ratio and dry weight of seedlings could be exploited in wheat breeding program for drought and osmotic stress tolerance.

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    Natalia Jelev, Alexandru Dascaliuc, Andrei Gore
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    Xiang Huang, Cunkai Luo, Xingxin Zhang, Lin Liu, Xiangcheng Zhou, Panxin Niu, Ping Jiang, Mei Wang, Guangming Chu
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    Heliyon.2024; 10(19): e38623.     CrossRef
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  • Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage
    Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
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  • PEG-Induced Osmotic Stress Alters Root Morphology and Root Hair Traits in Wheat Genotypes
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    Plants.2021; 10(6): 1042.     CrossRef
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Evaluation of Sprout Growth Traits and Flavonoid Content in Common and Tartary Buckwheat Germplasms
Muhammad Rauf, Hyemyeong Yoon, Sukyeung Lee, Do Yoon Hyun, Myung-Chul Lee, Sejong Oh, Yu-Mi Choi
Plant Breed. Biotech. 2019;7(4):375-385.   Published online December 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.4.375

Buckwheat sprouts are used as a functional food in several countries owing to their soft and slightly crispy texture and attractive fragrance. They possess excellent anti-oxidant activity and are rich in amino acids, minerals, and flavonoids; however, sprout growth and flavonoid content may vary among buckwheat germplasms. The present study was performed to evaluate 87 common and 13 tartary buckwheat germplasms for sprout growth traits and rutin and quercetin content. We found that the common type buckwheat sprouts had considerably higher leaf length and width, fresh shoot weight, and extract weight than those of tartary buckwheat sprouts, but the rutin and quercetin content was significantly higher in tartary buckwheat sprouts. The rutin content ranged from 323.7 to 750.6 mg/ 100 g DW in common buckwheat sprouts and 2220 to 3185 mg/100 g DW in tartary buckwheat sprouts. Similarly, the quercetin content ranged from 0.27 to 1.82 and 4.76 to 30.41 mg/100 g DW in common and tartary buckwheat sprouts, respectively. Additionally, there was no significant correlation between the growth traits and rutin content in common buckwheat sprouts, whereas, the leaf length of tartary buckwheat sprouts showed a significant positive correlation with the rutin content. This information can be used by plant breeders and plant geneticists to study the genetic and genomic approaches for buckwheat breeding program.

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  • Unlocking the Potential of Buckwheat Hulls, Sprouts, and Extracts: Innovative Food Product Development, Bioactive Compounds, and Health Benefits – a Review
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    Marta Molska, Julita Reguła, Ireneusz Kapusta, Michał Świeca
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    Mohammad K. Okla, Mohamed Abdel-Mawgoud, Saud A. Alamri, Zahid Khorshid Abbas, Wahidah H. Al-Qahtani, Salem Mesfir Al-Qahtani, Nadi Awad Al-Harbi, Abdelrahim H. A. Hassan, Samy Selim, Mohammed H. Alruhaili, Hamada AbdElgawad
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    Food Chemistry.2021; 345: 128788.     CrossRef
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DNA Barcoding for Efficient Identification of Triticum Subspecies: Evaluation of Four Candidate Loci on Phylogenetic Relationships
Sebastin Raveendar, Gi-An Lee, Kyung Jun Lee, Myoung-Jae Shin, Seong Hoon Kim, Jung-Ro Lee, Gyu-Taek Cho, Do Yoon Hyun
Plant Breed. Biotech. 2019;7(3):220-228.   Published online September 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.3.220

Since traditional taxonomic studies possess intrinsic limitations with plant species identification, combinations of DNA barcodes have been considered a powerful tool to discover undetected genetic variation within species across large geographic areas, providing more precise estimates of biodiversity. However, the lack of efficient and universal markers is often considered a peculiar challenge in molecular taxonomic studies across plant taxa. Similarly, many loci have been proposed for DNA barcodes; still standardizing regions as a DNA barcode is vital for making them efficiently discriminate plant species. In this study, we tested the phylogenetic utility of nuclear (nrDNA) region (ITS2) with chloroplast (cpDNA) regions (matK, psbA-trnH, and rbcL) for efficient discrimination of Triticum species. A total of 109 accessions representing 16 recognized genotypes in the Triticum genus have been sampled to assess the efficiency of barcoding loci to resolve species discrimination. As expected from earlier studies, our results also revealed that a single locus has difficulty in discriminating Triticum species. Species discrimination in Triticum taxa was martially improved by using a combination of gene loci; however, the closely related species, T. aestivum and T. turgidum, had no DNA barcode to separate them. Thus, we recommend further research on finding species-specific SNP using intragenic regions as standard DNA barcode loci in Poaceae.

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    Niki Mougiou, Spyros Didos, Ioanna Bouzouka, Athina Theodorakopoulou, Michael Kornaros, Ioannis Mylonas, Anagnostis Argiriou
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    Manal El-salato Ala El-naby Ahmed
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    S. Farhangian-kashani, A. Azadi, Sh. Khaghani, M. Changizi, M. Gomarian
    Biologia Futura.2021; 72(4): 441.     CrossRef
  • Genotyping-by-Sequencing Derived Single Nucleotide Polymorphisms Provide the First Well-Resolved Phylogeny for the Genus Triticum (Poaceae)
    Do Yoon Hyun, Raveendar Sebastin, Kyung Jun Lee, Gi-An Lee, Myoung-Jae Shin, Seong Hoon Kim, Jung-Ro Lee, Gyu-Taek Cho
    Frontiers in Plant Science.2020;[Epub]     CrossRef
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    Heba El-Sayed Ghareb, Shafik Darwish Ibrahim, Ghada Abd El-Moneim Hegazi
    Journal of Genetic Engineering and Biotechnology.2020; 18(1): 41.     CrossRef
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Impacts of Selection for Spike Length on Heat Stress Tolerance in Bread Wheat (Triticum aestivum L.)
Asmaa M. Mohamed, Mohamed K. Omara, Mahmoud A. El-Rawy, Mohamed I. Hassan
Plant Breed. Biotech. 2019;7(2):83-94.   Published online June 1, 2019
DOI: https://doi.org/10.9787/PBB.2019.7.2.83

Two consecutive cycles of selection were imposed on five F2 populations of bread wheat. The first cycle was a divergent selection for spike length conducted in favorable environment (optimal sowing date) and the response was measured under favorable and heat stress conditions of a late sowing date. Positive responses to selection for longer spikes were obtained under favorable (13.43%) heat stress (8.66%) conditions, whereas the responses for shorter spikes were 2.24 and 5.02% in the two environments, respectively. The realized heritability of spike length was greater under favorable conditions (0.25–0.56) than under heat stress (0.18–0.41). Concurrent positive responses to selection for longer spikes were obtained in grain yield per spike under favorable (25.35%) and heat stress (13.65%) environments. Selection for greater number of grains per spike imposed on F3 plants selected for spike length under heat stress resulted in significant responses (14.65%). Selection for greater number of grains per spike resulted in correlated responses in grain yield per spike (17.64%). The concurrent positive responses produced in spike length in F4 with selection for number of grains per spike (averaged 9.20%) was almost equal to that produced by the direct selection in F3 (8.66%), indicating that selection advance effected in F3 has been maintained in F4. High F4/F3 regression was obtained for spike length under heat stress (b = 0.85 ± 0.07), indicating high heritability. In conclusion, phenotypic selection for longer spikes under heat stress followed by a cycle of selection for number of grains per spike was capable of improving heat tolerance in wheat.

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    Journal of Plant Growth Regulation.2025; 44(2): 850.     CrossRef
  • Direct and Indirect Selection for Grain Yield and Grain Weight in Late Generations of Bread Wheat under Drought Stress and Normal Irrigation Environments
    Rasha E. Mahdy, Dikhnah Ashehri, Hanan Ali Alatawi, Hadba Al-Amrah, Ezzat E. Mahdy
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  • Effect of long-term heat stress on grain yield, pollen grain viability and germinability in bread wheat (Triticum aestivum L.) under field conditions
    J.E. Shenoda, Marwa N.M.E. Sanad, Aida A. Rizkalla, S. El-Assal, Rania T. Ali, Mona H. Hussein
    Heliyon.2021; 7(6): e07096.     CrossRef
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    Amandeep Kaur, Parveen Chhuneja, Puja Srivastava, Kuldeep Singh, Satinder Kaur
    Plant Genetic Resources: Characterization and Utilization.2021; 19(1): 74.     CrossRef
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Genetic Diversity and Population Structure of Mongolian Wheat Based on SSR Markers: Implications for Conservation and Management
Narantsetseg Ya, Sebastin Raveendar, N Bayarsukh, Myagmarsuren Ya, Jung-Ro Lee, Kyung-Jun Lee, Myoung-Jae Shin, Gyu-Taek Cho, Kyung-Ho Ma, Gi-An Lee
Plant Breed. Biotech. 2017;5(3):213-220.   Published online September 1, 2017
DOI: https://doi.org/10.9787/PBB.2017.5.3.213

Production of spring wheat, the major crop in Mongolia, accounts for 98% of the cultivated area. Understanding genetic variability in existing gene bank accessions is critical for collection, conservation and use of wheat germplasms. To determine genetic diversity and population structure among a representative collection of Mongolian local wheat cultivars and lines, 200 wheat accessions were analyzed with 15 SSR markers distributed throughout the wheat genome. A total of 85 alleles were detected, with three to five alleles per locus and a mean genetic richness of 5.66. Average genetic diversity index was 0.69, with values ranging from 0.37–0.80. The 200 Mongolian wheat accessions were mainly divided into two subgroups based on structure and phylogenetic analyses, and some phenotypes were divergent by the subgroups. Results from this study will provide valuable information for conservation and sustainable use of Mongolian wheat genetic resources.

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    Genes.2020; 12(1): 2.     CrossRef
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    Kamal Khadka, Davoud Torkamaneh, Mina Kaviani, Francois Belzile, Manish N. Raizada, Alireza Navabi
    BMC Plant Biology.2020;[Epub]     CrossRef
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    Cyrine Robbana, Zakaria Kehel, M’barek Ben Naceur, Carolina Sansaloni, Filippo Bassi, Ahmed Amri
    International Journal of Molecular Sciences.2019; 20(6): 1352.     CrossRef
  • Melatonin Mitigates Salt Stress in Wheat Seedlings by Modulating Polyamine Metabolism
    Qingbo Ke, Jun Ye, Bomei Wang, Jianhong Ren, Lina Yin, Xiping Deng, Shiwen Wang
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Allelic Variation of Rht-1, Vrn-1 and Ppd-1 in Korean Wheats and Its Effect on Agronomic Traits
Eun Jin Cho, Chon-Sik Kang, Ji-Ung Jung, Young Mi Yoon, Chul Soo Park
Plant Breed. Biotech. 2015;3(2):129-138.   Published online June 30, 2015
DOI: https://doi.org/10.9787/PBB.2015.3.2.129

The allelic variations at the Rht-1, Vrn-1 and Ppd-1 of 410 Korean wheat cultivars, including 111 Korean experimental lines, 238 Korean landraces and 61 North Korean collections, were investigated to provide the information of plant height and heading date and to elucidate the relationship between those traits and allelic variation of these genes because earliness is major consideration in Korean wheat production. All Korean wheats displayed vrn-A1 and Ppd-A1b alleles, while Rht-B1a, Rht-D1a, vrn-B1, Vrn-D1, Ppd-B1b and Ppd-D1a alleles were also predominantly found. Most Korean wheats carried both Rht-B1a and Rht-D1a alleles, both vrn-B1 and Vrn-D1 alleles, or both Ppd-B1b and Ppd-D1a alleles. The Rht-B1a, vrn-D1, Ppd-B1b and Ppd-D1b alleles were found to exhibit longer culm and spike length than their counterpart alleles. The Rht-B1a allele also showed longer spike length than Rht-B1b. Vrn-B1b and vrn-D1 alleles exhibited longer days to heading date than their counterpart alleles at the Vrn-B1 and Vrn-D1 loci. Lines carrying both Rht-B1b and Rht-D1b alleles displayed shorter culm and longer spike length and days to heading date than any other combination of alleles at the Rht-B1 and Rht-D1 loci. In contrast, lines carrying both Ppd-B1b and Ppd-D1b alleles exhibited longer culm and spike length than any other combination of alleles at the Ppd-B1 and Ppd-D1 loci.

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  • АЛМАТЫ ОБЛЫСЫ ЖАҒДАЙЫНДА ЖАЗДЫҚ ЖҰМСАҚ БИДАЙ ГЕНОТИПТЕРІНІҢ АБИОТИКАЛЫҚ СТРЕСС – ҚҰРҒАҚШЫЛЫҚҚА ЖӘНЕ БИОТИКАЛЫҚ СТРЕСС – ҚОҢЫР ТАТ (PUCCINIA RECONDITA) АУРУЫНА ТӨЗІМДІЛІГІН ФИТОПАТОЛОГИЯЛЫҚ БАҒАЛАУ
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  • QTL Mapping for Heading Date and Yield-Related Traits in a Doubled Haploid Population Derived from Two Korean Wheat Cultivars
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    Plant Breeding and Biotechnology.2023; 11(3): 197.     CrossRef
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  • Diversity of Ppd-1 genotypes of spring and winter bread wheat (Triticum aestivum L.) of Ukraine
    V. Fait, I. Balashova
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  • Allelic Variations in Phenology Genes of Eastern U.S. Soft Winter and Korean Winter Wheat and Their Associations with Heading Date
    Fengyun Ma, Gina Brown-Guedira, Moonseok Kang, Byung-Kee Baik
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  • Unlocking the Yield Potential of Wheat: Influence of Major Growth Habit and Adaptation Genes

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    Yuting Li, Hongchun Xiong, Huijun Guo, Chunyun Zhou, Yongdun Xie, Linshu Zhao, Jiayu Gu, Shirong Zhao, Yuping Ding, Luxiang Liu
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    Jeong Hwan Lee
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    Frontiers in Plant Science.2018;[Epub]     CrossRef
  • Assessment of DNA Markers Related to Days to Heading Date, Tiller Number, and Yield in Korean Wheat Populations
    Seong-Woo Cho, Taek-Gyu Kang, Seong-Wook Kang, Chon-Sik Kang, Chul Soo Park
    Korean Journal of Breeding Science.2018; 50(3): 211.     CrossRef
  • Genetic Mapping of the Leaf Number above the Primary Ear and Its Relationship with Plant Height and Flowering Time in Maize
    Min Cui, Bo Jia, Huanhuan Liu, Xin Kan, Yu Zhang, Ronghua Zhou, Zhipeng Li, Liang Yang, Dexiang Deng, Zhitong Yin
    Frontiers in Plant Science.2017;[Epub]     CrossRef
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A Diallel Analysis of Drought Tolerance Indices at Seedling Stage in Bread Wheat (Triticum aestivum L.)
Mahmoud A. El-Rawy, Mohamed I. Hassan
Plant Breed. Biotech. 2014;2(3):276-288.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.276

Drought is one of the most important abiotic factors affecting wheat production and development of tolerant genotypes is limited by the lack of effective selection criteria. A genetic analysis of drought tolerance indices at seedling stage (i.e. root length, shoot length, root/shoot ratio and seedling dry weight) was performed for a seven-parent half diallel cross of bread wheat (Triticum aestivum L.) in Egypt. The parents and their F2 progenies were evaluated in the laboratory under osmotic stress induced by polyethylene glycol (PEG) with five treatments (i.e. 0, 5, 10, 15 and 20% PEG-6000). Grain yield per spike was also evaluated under drought stressed field conditions. The parent P7 had maximum root and shoot lengths under stress conditions, highest root/shoot ratio under 20% PEG and higher grain yield per spike than the other parents suggesting that P7 possessed stress tolerance genes. Grain yield/spike was significantly correlated with root length (r= 0.41, P<0.05) and seedling dry weight (r= 0.46, P<0.05) at 15% PEG. Both additive and non-additive gene effects were involved in the genetic control of all traits. Rather low to moderately narrow-sense heritability was obtained for root length (0.18 and 0.12) and shoot length (0.19 and 0.12) at 15 and 20% PEG, respectively; root/shoot ratio (0.15) and seedling dry weight (0.16) at 15% PEG. Moderate genetic advance was observed for root length (41.24%) and shoot length (29.96%) under stress conditions suggesting that selection could be practiced on both traits for improving drought tolerance in wheat breeding programs.

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  • Correlation of Root System Architecture at Early Seedling Stage and Coleoptile Length and Grain Properties of Korean Wheat Cultivars
    Kyeong-Min Kim, Sumin Hong, Myung-Goo Choi, Changhyun Choi, Myoung Hui Lee, Mira Yoon, Chon-Sik Kang, Ki-Chang Jang, Youngjun Mo, Chul Soo Park
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  • Insights into Drought Tolerance of Tetraploid Wheat Genotypes in the Germination Stage Using Machine Learning Algorithms
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    Douha Mahmoud, Renu Pandey, Lekshmy Sathee, Monika Dalal, Madan Pal Singh, Viswanathan Chinnusamy
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  • Genetic analysis of drought-adaptive traits at seedling stage in early-maturing maize inbred lines and field performance under stress conditions
    S. A. Adewale, R. O. Akinwale, M. A. B. Fakorede, B. Badu-Apraku
    Euphytica.2018;[Epub]     CrossRef
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    Maria Khalid, Alvina Gul, Rabia Amir, Mohsin Ali, Fakiha Afzal, Umar Masood Quraishi, Zubair Ahmed, Awais Rasheed
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  • Evaluating interspecific wheat hybrids based on heat and drought stress tolerance
    Mohamed I. Hassan, Elsayed A. Mohamed, Mahmoud A. El-rawy, Karam A. Amein
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Mapping of QTL for Pre-Harvest Sprouting Resistance and Seed Dormancy in a Doubled Haploid Population
Kyeong-Hoon Kim, Ji-Ung Jung, Chon-Sik Kang, Sang-Hyun Shin, Jong-Chul Park, Jae-Han Son, Chul Soo Park
Plant Breed. Biotech. 2014;2(3):247-256.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.247

Pre-harvest sprouting (PHS) of wheat reduces grain yield and has deleterious effects on wheat flour quality. PHS resistance is strongly associated with grain color and seed dormancy. Resistance to PHS is a priority of wheat breeding program. We have studied a population of 122 Doubled Haploid (DH) lines from the cross between two cultivars, ‘Keumkang’ and ‘Olgeuru’, in order to detect QTLs correlated with PHS resistance. PHS was evaluated using mist spray in the humid chamber (PHS-MS), and the germination index (GI) was determined for two years. The variety ‘Keumkang’ has white grains and higher percentage of PHS rate (30.2%), while ‘Olgeuru’ has red grains and lower PHS rate (2.8%). There was significant difference in grain color according to the GI. PHS-MS was positively correlated with GI (r = 0.732, P < 0.001). Two molecular markers, Xbarc12 and Xgwm3, were found correlated with PHS resistance and GI. These markers were mapped on chromosomes 3A and 3D with LOD scores of 4.95 and 4.02, respectively. Xbarc12 explained the highest amount of phenotypic variation (R2) which is 11.99% in GI and 27.25% in PHS. Xgwm3 explained 9.10% of phenotypic variation in GI. The respective value of PHS-MS and GI in Korean wheat cultivars ranged from 1.37% to 86.75% and from 0.03 to 0.73. This study provides useful information for marker-assisted wheat breeding for PHS resistance improvement in Korea.

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    Ye-Ji Lee, So Youn Won, Jae-A Jung, Jung Sun Kim
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  • Current Trends in Wheat Breeding Strategies for Developing Domestic Wheat Cultivars in Korea
    Hajeong Kang, Hyoun-Min Park, San-Gu Lee, Eun-Ha Kim, Muhammad Imran, Hanyoung Choi, Myeong-Ji Kim, Seonwoo Oh
    Korean Journal of Breeding Science.2024; 56(4): 491.     CrossRef
  • Consensus genomic regions associated with multiple abiotic stress tolerance in wheat and implications for wheat breeding
    Mohammad Jafar Tanin, Dinesh Kumar Saini, Karansher Singh Sandhu, Neeraj Pal, Santosh Gudi, Jyoti Chaudhary, Achla Sharma
    Scientific Reports.2022;[Epub]     CrossRef
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    Yu Lin, Shihang Liu, Yaxi Liu, Yujiao Liu, Guoyue Chen, Jie Xu, Mei Deng, Qiantao Jiang, Yuming Wei, Yanli Lu, Youliang Zheng
    Genetics and Molecular Biology.2017; 40(3): 620.     CrossRef
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Development of SCAR Markers for Korean Wheat Cultivars Identification
Son Jae-Han, Kyeong-Hoon Kim, Sanghyun Shin, Induk Choi, Hag-Sin Kim, Young-Keun Cheong, Choon-Ki Lee, Sung-Il Lee, Ji-Yeong Choi, Kwang-Geun Park, Chon-Sik Kang
Plant Breed. Biotech. 2014;2(3):224-230.   Published online September 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.3.224

Amplified fragment length polymorphism (AFLP) is a molecular marker technique based on DNA and is extremely useful in detection of high polymorphism between closely related genotypes like Korean wheat cultivars. Six sequence characterized amplified regions (SCARs) have been developed from inter simple sequence repeat (ISSR) analysis which enabled the identification and differentiation of 13 Korean wheat cultivars from the other cultivars. We used six combinations of primer sets in our AFLP analysis for developing additional cultivar-specific markers in Korean wheat. Fifty-eight of the AFLP bands were isolated from EA-ACG/MA-CAC, EA-AGC/MA-CTG and EA-AGG/MA-CTA primer combinations. Of which 40 bands were selected to design SCAR primer pairs for Korean wheat cultivar identification. Three of 58 amplified primer pairs, KWSM006, KWSM007 and JkSP, enabled wheat cultivar identification. Consequently, 23 of 32 Korean wheat cultivars were classified by eight SCAR marker sets.

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    Woohyeon Cho, Jin-Kee Jung, Min-Young Kang, Yong Weon Seo, Jee Young Park, Tae-Jin Yang
    Food Science and Biotechnology.2022; 31(4): 423.     CrossRef
  • Development of CACTA transposon derived SCAR markers and their use in population structure analysis in Zea mays
    Neha Samir Roy, Kyong-Cheul Park, Sung-Il Lee, Min-Ji Im, Rahul Vasudeo Ramekar, Nam-Soo Kim
    Genetica.2018; 146(1): 1.     CrossRef
  • Development of a SCAR marker associated with salt tolerance in durum wheat (Triticum turgidum ssp. durum) from a semi-arid region
    Sang Heon Kim, Jae Yoon Kim, Dae Yeon Kim, Jin Seok Yoon, Woo Joo Jung, Inés Yacoubi, Yong Weon Seo
    Genes & Genomics.2016; 38(10): 939.     CrossRef
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Phenotypic and Genotypic Analyses of Drought Tolerance in Korean and Tunisian Wheat Cultivars
Sang Heon Kim, Dae Yeon Kim, Inés Yacoubi, Yong Weon Seo
Plant Breed. Biotech. 2014;2(2):139-150.   Published online June 30, 2014
DOI: https://doi.org/10.9787/PBB.2014.2.2.139

Common wheat (Triticum aestivum L.) and durum wheat (T. turgidum L. subsp. Durum) are major staple food crops in the world. However, their production are limited by environmental stress such as drought. In order to evaluate wheat’s response to drought, a total of 77 common wheat and durum wheat consisted of 19 Korean common wheat, 30 Tunisian common wheat and 28 Tunisian durum wheat were used in this study. Drought stress was applied for 21 days by suspending water application starting at the third leaf-expansion stage, followed by watering for the recovery of wheat until harvesting. Phenotypic parameters such as plant height, leaf length, tiller number, chlorophyll content, days to flowering and dry weight were scored during and after the treatment. Drought tolerance trait index (DTTI) and drought tolerance index (DTI) were calculated and used as criteria for selection of drought tolerance. At the end of treatment, most of the parameters except tiller numbers significantly decreased. Even after re-watering, plant height, leaf length, and dry weight continuously decreased. However, leaf chlorophyll content, and days to flowering of both stressed and non-stressed plants showed no significant differences. A total of 17 drought tolerance related simple sequence repeats (SSR) markers were used to identify genetic distance between Korean and Tunisian cultivars and elucidate possible use of marker systems for drought resistance. The common wheat and durum wheat cultivars formed different clusters for drought tolerance (resistance, moderate resistance, susceptible) using the SSR data. The results obtained in this study could help to increase genetic resources and breeding program for drought tolerance.

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    Molecular Biology Reports.2024;[Epub]     CrossRef
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    Ines Yacoubi, Agata Gadaleta, Nourhen Mathlouthi, Karama Hamdi, Angelica Giancaspro
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Development of single-nucleotide polymorphism markers of salinity tolerance for Tunisian durum wheat using RNA sequencing
    Sang Heon Kim, Dae Yeon Kim, Inés Yacoubi, Yong Weon Seo
    Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2021; 71(1): 28.     CrossRef
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  • Polymorphism of some transcription factor genes related to drought tolerance in wheat
    O. R. Lakhneko
    Biotechnologia Acta.2018; 11(2): 47.     CrossRef
  • Development of a SCAR marker associated with salt tolerance in durum wheat (Triticum turgidum ssp. durum) from a semi-arid region
    Sang Heon Kim, Jae Yoon Kim, Dae Yeon Kim, Jin Seok Yoon, Woo Joo Jung, Inés Yacoubi, Yong Weon Seo
    Genes & Genomics.2016; 38(10): 939.     CrossRef
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Identification of QTL for Grain Protein Content and Grain Hardness from Winter Wheat for Genetic Improvement of Spring Wheat
Hwayoung Heo, Jamie Sherman
Plant Breed. Biotech. 2013;1(4):347-353.   Published online December 31, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.4.347

To utilize the favorable gene(s) from winter wheat for genetic improvement of spring wheat, this study was carried out to identify the quantitative trait loci (QTL) associated with grain protein content (GPC) and grain hardness (GH) by analysis of recombinant inbred lines (RILS) derived from a cross between spring wheat and spring version of winter wheat. A genetic map of 334 loci was constructed which covered 1575.30cM on all 21 chromosomes. Two QTLs on 3B and 5B chromosome were detected for GPC. A QTL identified barc77 on chromosome 3B had additive effect of 0.17 and the other QTL identified by gwm499 on chromosome 5B had additive effect of 0.19. There were two major QTLs for GH identified on Chromosome 1B and chromosome 5A. The QTL on 1B was localized within a 18.7cM region flanked by wmc719 and wmc367-1 with 1.75 additive effect. The QTL on chromosome 5A flanked by SNP markers, IWA6573 and IWA2363, had additive effect of 1.44.

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    Min-Ju Kim, Myoung-Goo Choi, Go-Eun Lee, Chon-Sik Kang, Chang-Hyun Choi, Jun-Seok Choi, Myoung-Hui Lee, Jae-Han Son
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ISSR-derived Molecular Markers for Korean Wheat Cultivar Identification
Jae-Han Son, Kyeong-Hoon Kim, Sanghyun Shin, Hag-Sin Kim, Nam-Soo Kim, Jong-Nae Hyun, Sang-In Shim, Choon-Ki Lee, Kwang-Geun Park, Chon-Sik Kang
Plant Breed. Biotech. 2013;1(3):262-269.   Published online September 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.3.262

Inter simple sequence repeat (ISSR) is a technique that leads to the development of novel specific molecular markers and relationship analysis between species. In this study, 54 ISSRs were used to develop cultivar-specific DNA sequence characterized amplified regions (SCARs) for Korean wheat cultivars (Triticum aestivum). Using nine of 54 UBC ISSR primers, 16 cultivar-specific fragments were detected among 32 wheat cultivars. Of the 16 primers, 10 successfully amplified targets in 32 cultivars and six novel cultivar-specific markers were finally selected. A total of 13 Korean wheat cultivars (Ol, Dahong, Namhae, Jinpum, Anbaek, Jopoom, Jokyung, Sinmichal 1, Jeokjoong, Dajung, Goso and Joah) were classified by newly developed six SCAR markers. Cultivar-specific markers can be used not only for cultivar fingerprinting but also for marker-assisted selection in wheat breeding program.

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  • Molecular Characterization of Some Wheat Varıeties and Genotypes Grown in Syrıa and Türkiye Using ISSR Marker Technique
    Mhammed Anwr Jatal, Civan Çelik, Yaşar Karakurt, Emre Sevindik
    Biology Bulletin.2026;[Epub]     CrossRef
  • Assessment of Fusarium Head Blight Resistance Genes in Domestic Wheat Varieties
    Myoung Hui Lee, Changhyun Choi, Sumin Hong, Chon-Sik Kang, Mira Yoon, Ki-Chang Jang, Chul Soo Park, Kyeong-Min Kim
    Korean Journal of Breeding Science.2024; 56(3): 205.     CrossRef
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    Jinhee Park, Sumin Hong, Kyung-Hoon Kim, Kyung-Min Kim, Go-Eun Lee, Myoung-Goo Choi, Chon-Sik Kang, Youngjun Mo, Chul Soo Park, Changhyun Choi
    Korean Journal of Breeding Science.2023; 55(4): 325.     CrossRef
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    Korean Journal of Breeding Science.2022; 54(2): 119.     CrossRef
  • High-throughput SNP markers for authentication of Korean wheat cultivars based on seven complete plastomes and the nuclear genome
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    Kyeong Do Min, Yu Na Kang, Chang Soo Kim, Chang Hyun Choi, Jae Yoon Kim
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  • Comparative Analysis of Genetic Diversity in Some Non-commercial Cultivars of Musa L. from Assam, India, Using Morphometric and ISSR Markers
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Identification and Expression Analysis of Wheat Vacuolar Processing Enzymes (VPEs)
Tae Hoon Kang, Dae Yeon Kim, Yong Weon Seo
Plant Breed. Biotech. 2013;1(2):148-161.   Published online June 30, 2013
DOI: https://doi.org/10.9787/PBB.2013.1.2.148

Vacuolar proteins are associated with various functions, such as germination and programmed cell death (PCD) activity. Precursors of most vacuolar proteins are synthesized in the rough endoplasmic reticulum (rough ER). They are transported to the vacuoles, and converted into the mature forms. Vacuolar processing enzyme (VPE) is responsible for maturation of vacuolar proteins. Intensive studies revealed that VPE-mediated system is important for vacuolar functions in plant. However, the role and mechanism of VPE still remain to be elucidated, especially in wheat. Here, we isolated three putative wheat VPE genes which were designated as TaVPE2, 3 and 4. To investigate the expression of TaVPEs, RT-PCR was conducted using RNAs extracted from caryopsis, pericarp, leaf and/or stem tissues at seed development stage and leaf, stem and/or root of seedling with phytohormone or abiotic stress treatment. Transcript accumulation of TaVPEs including TaVPE1 was displayed in caryopsis during seed development stage. TaVPE1, TaVPE2 and TaVPE3 were expressed in root under abiotic stress whereas they showed no or very weak expression pattern in other tissue. Promoter region of TaVPEs contain many environmental-associated and tissue-specific cis-elements. In fact, VPEs sensitively responded to certain treatment condition. TaVPEs belong to seed type VPE in phylogenetic grouping. However, expression pattern of TaVPEs is different from other seed type VPEs. The classification into vegetative and seed type VPE according to gene expression patterns cannot be applied to TaVPEs.

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    Plant Molecular Biology.2015; 88(1-2): 177.     CrossRef
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    Valérie Poncet, Charlie Scutt, Rémi Tournebize, Matthieu Villegente, Gwendal Cueff, Loïc Rajjou, Thierry Balliau, Michel Zivy, Bruno Fogliani, Claudette Job, Alexandre de Kochko, Valérie Sarramegna-Burtet, Dominique Job
    Frontiers in Plant Science.2015;[Epub]     CrossRef
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